Strain Fitness in Shewanella amazonensis SB2B around Sama_3449

Experiment: outer cut, LB soft agar motility assay

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	outer cut, LB soft agar motility assay
4,078,906	-		Sama_3448	0.28	+1.2
4,078,906	-		Sama_3448	0.28	+2.1
4,078,935	+		Sama_3448	0.30	+0.6
4,078,935	+		Sama_3448	0.30	+1.4
4,078,935	+		Sama_3448	0.30	-0.6
4,078,936	-		Sama_3448	0.30	+0.7
4,078,936	-		Sama_3448	0.30	+4.6
4,078,936	-		Sama_3448	0.30	+3.5
4,078,936	-		Sama_3448	0.30	+0.1
4,078,936	-		Sama_3448	0.30	+1.8
4,078,936	-		Sama_3448	0.30	+1.3
4,078,976	+		Sama_3448	0.33	-1.6
4,079,105	-		Sama_3448	0.44	+1.7
4,079,147	-		Sama_3448	0.48	+0.2
4,079,147	-		Sama_3448	0.48	+1.9
4,079,147	-		Sama_3448	0.48	+2.5
4,079,182	+		Sama_3448	0.50	-0.0
4,079,182	+		Sama_3448	0.50	+1.4
4,079,183	-		Sama_3448	0.51	+1.4
4,079,183	-		Sama_3448	0.51	+3.6
4,079,197	+		Sama_3448	0.52	+1.1
4,079,220	-		Sama_3448	0.54	+0.6
4,079,220	-		Sama_3448	0.54	+2.7
4,079,278	+		Sama_3448	0.58	-0.5
4,079,278	+		Sama_3448	0.58	+3.1
4,079,329	-		Sama_3448	0.63	+0.2
4,079,329	-		Sama_3448	0.63	+0.4
4,079,329	-		Sama_3448	0.63	+1.2
4,079,342	+		Sama_3448	0.64	-1.2
4,079,342	+		Sama_3448	0.64	-1.3
4,079,342	+		Sama_3448	0.64	-1.2
4,079,343	-		Sama_3448	0.64	+2.8
4,079,343	-		Sama_3448	0.64	+1.4
4,079,383	+		Sama_3448	0.67	-0.5
4,079,383	+		Sama_3448	0.67	+0.4
4,079,383	+		Sama_3448	0.67	+2.9
4,079,384	-		Sama_3448	0.67	+3.2
4,079,384	-		Sama_3448	0.67	+3.4
4,079,389	+		Sama_3448	0.68	+2.6
4,079,389	+		Sama_3448	0.68	+0.1
4,079,389	+		Sama_3448	0.68	+4.0
4,079,390	-		Sama_3448	0.68	+4.0
4,079,390	-		Sama_3448	0.68	+1.1
4,079,390	-		Sama_3448	0.68	+1.5
4,079,390	-		Sama_3448	0.68	+2.0
4,079,390	-		Sama_3448	0.68	-2.1
4,079,390	-		Sama_3448	0.68	+3.5
4,079,416	+		Sama_3448	0.70	+2.0
4,079,416	+		Sama_3448	0.70	+1.1
4,079,416	+		Sama_3448	0.70	+2.3
4,079,417	-		Sama_3448	0.70	+2.8
4,079,417	-		Sama_3448	0.70	+2.5
4,079,417	-		Sama_3448	0.70	+2.0
4,079,417	-		Sama_3448	0.70	+0.4
4,079,417	-		Sama_3448	0.70	+2.3
4,079,417	-		Sama_3448	0.70	+2.9
4,079,476	-		Sama_3448	0.75	+2.0
4,079,542	+		Sama_3448	0.80	-1.9
4,079,542	+		Sama_3448	0.80	+0.9
4,079,542	+		Sama_3448	0.80	+3.4
4,079,542	+		Sama_3448	0.80	+1.6
4,079,542	+		Sama_3448	0.80	+2.8
4,079,542	+		Sama_3448	0.80	+1.0
4,079,542	+		Sama_3448	0.80	+3.5
4,079,542	+		Sama_3448	0.80	+0.4
4,079,543	-		Sama_3448	0.80	+3.3
4,079,543	-		Sama_3448	0.80	+1.7
4,079,543	-		Sama_3448	0.80	+2.1
4,079,543	-		Sama_3448	0.80	+2.0
4,079,543	-		Sama_3448	0.80	+3.5
4,079,543	-		Sama_3448	0.80	+1.9
4,079,543	-		Sama_3448	0.80	+1.4
4,079,543	-		Sama_3448	0.80	+3.9
4,079,543	-		Sama_3448	0.80	+2.5
4,079,582	-		Sama_3448	0.84	+3.5
4,079,601	+		Sama_3448	0.85	+1.1
4,079,601	+		Sama_3448	0.85	-0.6
4,079,602	-		Sama_3448	0.85	+2.4
4,079,602	-		Sama_3448	0.85	+0.3
4,079,602	-		Sama_3448	0.85	+1.4
4,079,602	-		Sama_3448	0.85	-0.2
4,079,607	+		Sama_3448	0.86	+0.9
4,079,607	+		Sama_3448	0.86	-0.6
4,079,607	+		Sama_3448	0.86	+2.5
4,079,608	-		Sama_3448	0.86	-2.7
4,079,608	-		Sama_3448	0.86	-0.0
4,079,710	+				+1.3
4,079,710	+				+1.7
4,079,710	+				-1.4
4,079,710	+				-0.2
4,079,710	+				+2.6
4,079,710	+				-1.6
4,079,710	+				+2.8
4,079,710	+				+0.1
4,079,710	+				-0.6
4,079,710	+				+1.4
4,079,710	+				+2.8
4,079,710	+				+2.8
4,079,711	-				+1.4
4,079,711	-				+1.0
4,079,711	-				-0.9
4,079,711	-				+1.5
4,079,711	-				+0.3
4,079,711	-				-0.1
4,079,711	-				+2.4
4,079,711	-				-0.2
4,079,711	-				+4.2
4,079,711	-				+0.1
4,079,711	-				+1.2
4,079,711	-				+2.5
4,079,733	+				-0.9
4,079,734	-				+1.4
4,079,734	-				-0.5
4,079,734	-				-0.6
4,079,757	-				+0.6
4,079,757	-				+0.5
4,079,807	+				+1.4
4,079,809	+				+2.1
4,079,810	-				+1.6
4,079,810	-				+1.1
4,079,810	-				-0.6
4,079,820	+				+1.7
4,079,820	+				-2.9
4,079,820	+				+1.5
4,079,821	-				-0.9
4,079,834	+				+3.5
4,079,834	+				+1.6
4,079,835	-				-1.1
4,079,835	-				+2.8
4,079,851	+				+3.5
4,079,933	+				+0.3
4,079,934	-				-0.3
4,079,942	+				+0.7
4,079,942	+				+0.1
4,079,942	+				-0.5
4,079,942	+				+3.1
4,079,943	-				-1.6
4,080,123	-		Sama_3449	0.24	+2.0
4,080,203	+		Sama_3449	0.32	+3.7
4,080,203	+		Sama_3449	0.32	+5.0
4,080,203	+		Sama_3449	0.32	+2.4
4,080,203	+		Sama_3449	0.32	+3.9
4,080,203	+		Sama_3449	0.32	+2.7
4,080,203	+		Sama_3449	0.32	+1.4
4,080,203	+		Sama_3449	0.32	-1.1
4,080,204	-		Sama_3449	0.32	+2.0
4,080,204	-		Sama_3449	0.32	+1.8
4,080,204	-		Sama_3449	0.32	+2.1
4,080,204	-		Sama_3449	0.32	+1.6
4,080,204	-		Sama_3449	0.32	+1.0
4,080,204	-		Sama_3449	0.32	+1.5
4,080,204	-		Sama_3449	0.32	+2.7
4,080,215	-		Sama_3449	0.33	+0.5
4,080,215	-		Sama_3449	0.33	+2.6
4,080,283	+		Sama_3449	0.40	+2.5
4,080,284	-		Sama_3449	0.40	+1.2
4,080,341	+		Sama_3449	0.46	+1.3
4,080,378	+		Sama_3449	0.50	+1.6
4,080,379	-		Sama_3449	0.50	+2.9
4,080,418	+		Sama_3449	0.54	-1.4
4,080,418	+		Sama_3449	0.54	+1.0
4,080,418	+		Sama_3449	0.54	+1.6
4,080,418	+		Sama_3449	0.54	+0.8
4,080,418	+		Sama_3449	0.54	+2.4
4,080,444	-		Sama_3449	0.57	+3.3
4,080,444	-		Sama_3449	0.57	+3.6
4,080,444	-		Sama_3449	0.57	+1.2
4,080,444	-		Sama_3449	0.57	+1.9
4,080,464	+		Sama_3449	0.59	+5.0
4,080,464	+		Sama_3449	0.59	-2.3
4,080,503	-		Sama_3449	0.63	+2.4
4,080,527	+		Sama_3449	0.65	+0.8
4,080,527	+		Sama_3449	0.65	+3.9
4,080,527	+		Sama_3449	0.65	+0.4
4,080,527	+		Sama_3449	0.65	+3.2
4,080,527	+		Sama_3449	0.65	+1.8
4,080,528	-		Sama_3449	0.65	+4.3
4,080,528	-		Sama_3449	0.65	-2.2
4,080,528	-		Sama_3449	0.65	+2.1
4,080,528	-		Sama_3449	0.65	+4.0
4,080,528	-		Sama_3449	0.65	+2.5
4,080,528	-		Sama_3449	0.65	+1.5
4,080,528	-		Sama_3449	0.65	-0.1
4,080,528	-		Sama_3449	0.65	+1.8
4,080,540	+		Sama_3449	0.67	+2.6
4,080,563	-		Sama_3449	0.69	+2.1
4,080,565	+		Sama_3449	0.69	+1.0
4,080,565	+		Sama_3449	0.69	+2.6
4,080,565	+		Sama_3449	0.69	+4.2
4,080,565	+		Sama_3449	0.69	+1.8
4,080,565	+		Sama_3449	0.69	+1.8
4,080,565	+		Sama_3449	0.69	+2.5
4,080,566	-		Sama_3449	0.69	-1.8
4,080,566	-		Sama_3449	0.69	+2.9
4,080,566	-		Sama_3449	0.69	-0.2
4,080,566	-		Sama_3449	0.69	+2.7
4,080,596	+		Sama_3449	0.72	-0.2
4,080,596	+		Sama_3449	0.72	+2.1
4,080,596	+		Sama_3449	0.72	+3.2
4,080,596	+		Sama_3449	0.72	+1.1
4,080,596	+		Sama_3449	0.72	-0.6
4,080,596	+		Sama_3449	0.72	+3.8
4,080,596	+		Sama_3449	0.72	+1.9
4,080,596	+		Sama_3449	0.72	+5.5
4,080,597	-		Sama_3449	0.72	-1.8
4,080,597	-		Sama_3449	0.72	+2.2
4,080,597	-		Sama_3449	0.72	+1.7
4,080,597	-		Sama_3449	0.72	+2.5
4,080,597	-		Sama_3449	0.72	-1.6
4,080,597	-		Sama_3449	0.72	-2.9
4,080,597	-		Sama_3449	0.72	+2.5
4,080,597	-		Sama_3449	0.72	+2.1
4,080,700	+		Sama_3449	0.83	+2.0
4,080,700	+		Sama_3449	0.83	+1.5
4,080,701	-		Sama_3449	0.83	+3.5
4,080,701	-		Sama_3449	0.83	+0.3
4,080,735	+		Sama_3449	0.86	-1.9
4,080,736	-		Sama_3449	0.87	+1.2
4,080,736	-		Sama_3449	0.87	+0.4
4,080,748	+		Sama_3449	0.88	+2.4
4,080,748	+		Sama_3449	0.88	-0.2
4,080,748	+		Sama_3449	0.88	+3.4
4,080,749	-		Sama_3449	0.88	+2.3
4,080,749	-		Sama_3449	0.88	+0.3
4,080,749	-		Sama_3449	0.88	+4.7
4,080,749	-		Sama_3449	0.88	-0.6
4,080,749	-		Sama_3449	0.88	+4.4
4,080,749	-		Sama_3449	0.88	+1.8
4,080,749	-		Sama_3449	0.88	+3.1
4,080,749	-		Sama_3449	0.88	-0.6
4,080,749	-		Sama_3449	0.88	+0.5
4,080,800	+				+1.4
4,080,811	-				+3.6
4,080,811	-				+4.1
4,080,811	-				-1.0
4,080,828	+				+0.5
4,080,829	-				-3.0
4,080,865	+				-1.0
4,080,871	+				-3.0
4,080,871	+				-2.3
4,080,872	-				-0.2
4,080,884	+				-0.6
4,080,884	+				+0.0
4,080,884	+				-2.1
4,080,884	+				+1.6
4,080,885	-				-1.4
4,080,898	+				+2.7
4,080,898	+				-2.8
4,080,899	-				+0.4
4,080,937	-				+0.2
4,080,937	-				-2.8
4,080,943	+				+1.5
4,080,943	+				-2.2
4,080,943	+				+1.4
4,080,943	+				-0.9
4,080,943	+				+0.0
4,080,943	+				-0.0
4,080,944	-				-3.0
4,080,944	-				-2.9
4,080,944	-				-0.0
4,080,944	-				+1.8
4,080,944	-				+1.1
4,080,944	-				+1.4
4,081,056	+		Sama_3450	0.35	-2.5
4,081,056	+		Sama_3450	0.35	+2.0
4,081,057	-		Sama_3450	0.36	+2.7
4,081,057	-		Sama_3450	0.36	+0.2
4,081,061	+		Sama_3450	0.37	+0.1
4,081,061	+		Sama_3450	0.37	+0.2
4,081,088	+		Sama_3450	0.45	+1.4
4,081,088	+		Sama_3450	0.45	+1.4
4,081,088	+		Sama_3450	0.45	-1.8
4,081,088	+		Sama_3450	0.45	+2.0
4,081,089	-		Sama_3450	0.45	+0.9
4,081,170	+		Sama_3450	0.69	-0.2
4,081,170	+		Sama_3450	0.69	-0.6
4,081,280	+				+1.5
4,081,280	+				-2.2
4,081,280	+				-0.8
4,081,280	+				-0.2
4,081,280	+				+0.0
4,081,280	+				-0.3
4,081,280	+				+1.9
4,081,280	+				-1.2
4,081,280	+				-1.1
4,081,280	+				-1.5
4,081,280	+				-3.3
4,081,281	-				-0.5
4,081,281	-				+2.5
4,081,281	-				+1.6
4,081,281	-				-1.4
4,081,281	-				-0.7
4,081,281	-				+3.5
4,081,281	-				-0.2
4,081,281	-				-1.0
4,081,286	+				+0.4
4,081,286	+				+0.4
4,081,286	+				-0.9
4,081,287	-				-0.4
4,081,287	-				+1.4
4,081,287	-				+3.2
4,081,374	+				-2.3
4,081,374	+				+0.4
4,081,375	-				-1.8
4,081,375	-				-3.2
4,081,431	+		Sama_3451	0.10	-2.1
4,081,431	+		Sama_3451	0.10	+0.8
4,081,431	+		Sama_3451	0.10	+1.6
4,081,432	-		Sama_3451	0.10	+1.4
4,081,536	+		Sama_3451	0.17	+1.4
4,081,536	+		Sama_3451	0.17	-2.1
4,081,536	+		Sama_3451	0.17	-0.6
4,081,537	-		Sama_3451	0.17	-1.0
4,081,592	+		Sama_3451	0.21	+1.9
4,081,592	+		Sama_3451	0.21	-0.3
4,081,593	-		Sama_3451	0.21	+1.8
4,081,610	-		Sama_3451	0.23	+1.9
4,081,644	+		Sama_3451	0.25	-2.2
4,081,644	+		Sama_3451	0.25	-2.6
4,081,644	+		Sama_3451	0.25	-0.6
4,081,644	+		Sama_3451	0.25	-0.2
4,081,644	+		Sama_3451	0.25	-0.6
4,081,644	+		Sama_3451	0.25	-2.2
4,081,644	+		Sama_3451	0.25	-1.4
4,081,644	+		Sama_3451	0.25	-2.3
4,081,645	-		Sama_3451	0.25	-0.7
4,081,645	-		Sama_3451	0.25	-0.2
4,081,645	-		Sama_3451	0.25	-0.1
4,081,645	-		Sama_3451	0.25	-2.6
4,081,645	-		Sama_3451	0.25	+0.4
4,081,645	-		Sama_3451	0.25	-1.4
4,081,645	-		Sama_3451	0.25	-1.2
4,081,645	-		Sama_3451	0.25	-0.6
4,081,769	+		Sama_3451	0.34	-1.1
4,081,769	+		Sama_3451	0.34	+0.6
4,081,770	-		Sama_3451	0.34	+3.5
4,081,770	-		Sama_3451	0.34	-0.2
4,081,809	+		Sama_3451	0.36	-2.8
4,081,809	+		Sama_3451	0.36	-2.7
4,081,818	-		Sama_3451	0.37	+2.2
4,081,818	-		Sama_3451	0.37	+1.4
4,081,818	-		Sama_3451	0.37	-0.1
4,081,845	-		Sama_3451	0.39	-1.5
4,081,853	-		Sama_3451	0.40	+2.4
4,081,864	-		Sama_3451	0.40	-0.9
4,081,864	-		Sama_3451	0.40	+1.4