Strain Fitness in Shewanella amazonensis SB2B around Sama_3384

Experiment: outer cut, LB soft agar motility assay

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	outer cut, LB soft agar motility assay
4,009,570	-		Sama_3382	0.59	-0.8
4,009,570	-		Sama_3382	0.59	-1.8
4,009,593	+		Sama_3382	0.60	+2.0
4,009,679	-		Sama_3382	0.67	-0.3
4,009,719	+		Sama_3382	0.70	+0.3
4,009,719	+		Sama_3382	0.70	-2.1
4,009,719	+		Sama_3382	0.70	-1.3
4,009,720	-		Sama_3382	0.70	-1.1
4,009,720	-		Sama_3382	0.70	-0.1
4,009,770	+		Sama_3382	0.73	-0.8
4,009,817	+		Sama_3382	0.77	-0.5
4,009,882	+		Sama_3382	0.81	-0.7
4,009,958	+		Sama_3382	0.87	+0.2
4,009,982	+		Sama_3382	0.89	-3.0
4,009,982	+		Sama_3382	0.89	-1.5
4,009,982	+		Sama_3382	0.89	+0.4
4,010,017	+				+0.4
4,010,017	+				-1.2
4,010,017	+				+0.8
4,010,017	+				-0.2
4,010,017	+				+0.3
4,010,017	+				+0.1
4,010,017	+				+0.0
4,010,017	+				-2.1
4,010,017	+				-0.2
4,010,017	+				-0.6
4,010,017	+				+0.3
4,010,017	+				-1.2
4,010,018	-				-0.7
4,010,018	-				-1.8
4,010,018	-				-0.1
4,010,018	-				+0.0
4,010,018	-				-1.5
4,010,018	-				-0.7
4,010,018	-				-1.2
4,010,018	-				-0.2
4,010,018	-				-1.2
4,010,018	-				+1.1
4,010,018	-				-0.2
4,010,101	+				-1.7
4,010,101	+				-1.0
4,010,101	+				-1.5
4,010,101	+				-3.8
4,010,102	-				-0.5
4,010,102	-				-0.6
4,010,102	-				+0.2
4,010,102	-				-0.2
4,010,102	-				+0.8
4,010,103	+				-0.9
4,010,104	-				+0.8
4,010,104	-				-0.5
4,010,136	+				-1.8
4,010,136	+				-1.8
4,010,136	+				-2.4
4,010,136	+				-0.8
4,010,136	+				+0.9
4,010,136	+				-1.6
4,010,137	-				-1.2
4,010,137	-				-1.5
4,010,137	-				-1.7
4,010,137	-				-2.8
4,010,137	-				-0.2
4,010,137	-				-0.2
4,010,137	-				-1.0
4,010,137	-				-0.4
4,010,137	-				-3.2
4,010,137	-				-1.2
4,010,178	+		Sama_3383	0.13	-0.8
4,010,178	+		Sama_3383	0.13	-0.0
4,010,178	+		Sama_3383	0.13	-1.0
4,010,178	+		Sama_3383	0.13	+0.5
4,010,178	+		Sama_3383	0.13	-3.6
4,010,178	+		Sama_3383	0.13	-1.0
4,010,179	-		Sama_3383	0.13	-1.2
4,010,286	-		Sama_3383	0.43	-2.1
4,010,311	+		Sama_3383	0.50	-1.7
4,010,311	+		Sama_3383	0.50	+0.1
4,010,312	-		Sama_3383	0.50	-1.0
4,010,312	-		Sama_3383	0.50	+0.4
4,010,313	+		Sama_3383	0.50	-1.0
4,010,313	+		Sama_3383	0.50	-1.0
4,010,314	-		Sama_3383	0.50	-2.0
4,010,314	-		Sama_3383	0.50	-0.7
4,010,314	-		Sama_3383	0.50	+2.5
4,010,314	-		Sama_3383	0.50	+0.6
4,010,314	-		Sama_3383	0.50	-2.5
4,010,314	-		Sama_3383	0.50	+1.9
4,010,343	+		Sama_3383	0.58	+0.9
4,010,343	+		Sama_3383	0.58	+0.8
4,010,361	-		Sama_3383	0.63	-0.7
4,010,391	-		Sama_3383	0.72	-0.8
4,010,428	+		Sama_3383	0.82	+0.9
4,010,428	+		Sama_3383	0.82	-1.0
4,010,428	+		Sama_3383	0.82	+1.0
4,010,428	+		Sama_3383	0.82	-2.4
4,010,429	-		Sama_3383	0.82	-1.8
4,010,429	-		Sama_3383	0.82	-1.5
4,010,506	+				-3.2
4,010,520	+				+1.3
4,010,520	+				-1.4
4,010,520	+				-0.2
4,010,521	-				-0.4
4,010,521	-				-1.7
4,010,521	-				-1.1
4,010,528	+				-2.6
4,010,528	+				-2.5
4,010,528	+				-1.0
4,010,529	-				+1.2
4,010,529	-				-2.4
4,010,529	-				-0.5
4,010,613	-				-1.5
4,010,613	-				-1.3
4,010,623	+				-1.0
4,010,623	+				-0.7
4,010,623	+				-1.7
4,010,623	+				-0.2
4,010,623	+				-1.2
4,010,623	+				+2.2
4,010,623	+				-0.8
4,010,623	+				-2.5
4,010,623	+				-1.6
4,010,623	+				-1.0
4,010,624	-				-0.7
4,010,624	-				-0.2
4,010,624	-				+2.7
4,010,624	-				-1.5
4,010,624	-				+0.5
4,010,624	-				-3.8
4,010,624	-				-2.0
4,010,624	-				-1.8
4,010,646	+				-0.4
4,010,647	-				+1.3
4,010,647	-				-0.7
4,010,647	-				-2.2
4,010,647	-				-2.7
4,010,724	+		Sama_3384	0.14	-1.5
4,010,724	+		Sama_3384	0.14	-1.0
4,010,724	+		Sama_3384	0.14	-3.0
4,010,724	+		Sama_3384	0.14	-0.2
4,010,725	-		Sama_3384	0.14	+0.4
4,010,725	-		Sama_3384	0.14	-1.5
4,010,725	-		Sama_3384	0.14	-0.1
4,010,725	-		Sama_3384	0.14	+2.8
4,010,800	+		Sama_3384	0.19	+1.1
4,010,800	+		Sama_3384	0.19	-2.1
4,010,800	+		Sama_3384	0.19	+1.8
4,010,800	+		Sama_3384	0.19	-2.8
4,010,800	+		Sama_3384	0.19	+0.3
4,010,801	-		Sama_3384	0.19	-0.1
4,010,801	-		Sama_3384	0.19	-1.7
4,010,801	-		Sama_3384	0.19	+0.3
4,010,801	-		Sama_3384	0.19	+0.3
4,010,801	-		Sama_3384	0.19	+1.9
4,010,801	-		Sama_3384	0.19	-1.8
4,010,801	-		Sama_3384	0.19	-1.5
4,010,801	-		Sama_3384	0.19	+0.5
4,010,801	-		Sama_3384	0.19	-1.0
4,010,801	-		Sama_3384	0.19	-1.7
4,010,850	+		Sama_3384	0.22	+1.5
4,010,880	+		Sama_3384	0.23	+0.2
4,010,881	-		Sama_3384	0.23	-2.2
4,010,881	-		Sama_3384	0.23	+0.4
4,010,889	+		Sama_3384	0.24	-2.4
4,010,889	+		Sama_3384	0.24	+2.2
4,010,890	-		Sama_3384	0.24	-0.3
4,010,890	-		Sama_3384	0.24	-1.3
4,010,890	-		Sama_3384	0.24	-1.2
4,010,890	-		Sama_3384	0.24	-0.7
4,010,890	-		Sama_3384	0.24	+0.9
4,010,891	+		Sama_3384	0.24	-1.7
4,010,891	+		Sama_3384	0.24	-2.6
4,010,891	+		Sama_3384	0.24	-1.0
4,010,891	+		Sama_3384	0.24	-0.0
4,010,891	+		Sama_3384	0.24	-0.3
4,010,891	+		Sama_3384	0.24	-0.2
4,010,892	-		Sama_3384	0.24	-2.2
4,010,892	-		Sama_3384	0.24	-3.4
4,010,892	-		Sama_3384	0.24	-3.0
4,010,892	-		Sama_3384	0.24	-1.4
4,010,892	-		Sama_3384	0.24	+1.4
4,010,892	-		Sama_3384	0.24	+0.4
4,010,892	-		Sama_3384	0.24	-1.7
4,010,892	-		Sama_3384	0.24	+2.5
4,010,933	+		Sama_3384	0.27	-2.8
4,010,934	-		Sama_3384	0.27	+1.3
4,010,996	-		Sama_3384	0.30	-1.5
4,011,052	-		Sama_3384	0.34	-2.6
4,011,096	+		Sama_3384	0.36	+0.9
4,011,258	+		Sama_3384	0.46	-1.9
4,011,259	-		Sama_3384	0.46	-1.2
4,011,288	+		Sama_3384	0.48	-2.0
4,011,327	+		Sama_3384	0.50	+0.7
4,011,327	+		Sama_3384	0.50	-0.2
4,011,328	-		Sama_3384	0.50	-0.2
4,011,328	-		Sama_3384	0.50	-1.8
4,011,342	+		Sama_3384	0.51	+0.1
4,011,342	+		Sama_3384	0.51	-0.0
4,011,350	+		Sama_3384	0.52	+0.3
4,011,461	+		Sama_3384	0.58	-2.2
4,011,461	+		Sama_3384	0.58	-1.4
4,011,569	+		Sama_3384	0.65	+0.8
4,011,604	+		Sama_3384	0.67	+0.7
4,011,618	-		Sama_3384	0.68	-1.0
4,011,661	+		Sama_3384	0.70	-0.9
4,011,661	+		Sama_3384	0.70	-1.5
4,011,662	-		Sama_3384	0.70	+1.7
4,011,742	+		Sama_3384	0.75	-2.5
4,011,743	-		Sama_3384	0.75	-2.6
4,011,755	+		Sama_3384	0.76	+0.0
4,011,755	+		Sama_3384	0.76	-1.0
4,011,755	+		Sama_3384	0.76	-0.6
4,011,756	-		Sama_3384	0.76	-0.5
4,011,776	+		Sama_3384	0.77	+1.9
4,011,776	+		Sama_3384	0.77	+1.5
4,011,776	+		Sama_3384	0.77	-1.0
4,011,776	+		Sama_3384	0.77	-0.4
4,011,777	-		Sama_3384	0.77	-2.7
4,011,777	-		Sama_3384	0.77	-0.0
4,011,777	-		Sama_3384	0.77	+0.9
4,011,783	-		Sama_3384	0.78	-0.2
4,011,823	+		Sama_3384	0.80	+0.6
4,011,947	-		Sama_3384	0.88	-0.4
4,011,947	-		Sama_3384	0.88	-0.3
4,012,046	+				+2.2
4,012,047	-				-1.2
4,012,068	+				-4.4
4,012,068	+				+0.7
4,012,068	+				-0.3
4,012,069	-				-0.0
4,012,069	-				-1.2
4,012,069	-				+3.0
4,012,069	-				-1.5
4,012,089	+				-1.7
4,012,090	-				+2.9
4,012,090	-				-0.6
4,012,149	+				+0.5
4,012,157	+				-2.5
4,012,157	+				-1.8
4,012,157	+				-0.2
4,012,157	+				+1.3
4,012,158	-				+0.9
4,012,186	-				-0.1
4,012,186	-				-2.8
4,012,194	+				+1.0
4,012,194	+				-2.2
4,012,195	-				+0.6
4,012,224	+				+0.3
4,012,225	-				-1.4
4,012,225	-				+2.2
4,012,250	+				-1.1
4,012,250	+				+0.3
4,012,250	+				-2.6
4,012,250	+				-0.1
4,012,250	+				+1.0
4,012,250	+				-0.6
4,012,250	+				+0.5
4,012,251	-				+0.6
4,012,251	-				-1.5
4,012,251	-				-3.3
4,012,251	-				+0.3
4,012,251	-				-0.0
4,012,260	-				-0.1
4,012,309	+				-1.8
4,012,309	+				-1.2
4,012,309	+				+1.5
4,012,309	+				-0.5
4,012,310	-				-2.5
4,012,318	+				+0.1
4,012,318	+				-3.0
4,012,318	+				+1.4
4,012,318	+				+0.7
4,012,318	+				-1.8
4,012,318	+				+1.0
4,012,318	+				-0.5
4,012,319	-				-0.5
4,012,319	-				-0.5
4,012,370	+		Sama_3385	0.12	+2.1
4,012,370	+		Sama_3385	0.12	+1.6
4,012,370	+		Sama_3385	0.12	-0.2
4,012,370	+		Sama_3385	0.12	+0.3
4,012,370	+		Sama_3385	0.12	-0.2
4,012,370	+		Sama_3385	0.12	+0.2
4,012,371	-		Sama_3385	0.12	+0.5
4,012,371	-		Sama_3385	0.12	-0.2
4,012,371	-		Sama_3385	0.12	+0.8
4,012,371	-		Sama_3385	0.12	+0.2
4,012,375	+		Sama_3385	0.12	-1.9
4,012,375	+		Sama_3385	0.12	+0.0
4,012,376	-		Sama_3385	0.12	-0.9
4,012,383	-		Sama_3385	0.12	+2.2
4,012,418	+		Sama_3385	0.15	+0.5
4,012,418	+		Sama_3385	0.15	+1.0
4,012,492	-		Sama_3385	0.19	-1.2
4,012,492	-		Sama_3385	0.19	-1.7
4,012,492	-		Sama_3385	0.19	-1.0
4,012,596	+		Sama_3385	0.26	-1.2
4,012,597	-		Sama_3385	0.26	-1.7
4,012,670	-		Sama_3385	0.31	-2.7
4,012,670	-		Sama_3385	0.31	+0.6
4,012,670	-		Sama_3385	0.31	+0.1
4,012,689	-		Sama_3385	0.32	+0.6
4,012,755	+		Sama_3385	0.36	-0.7
4,012,755	+		Sama_3385	0.36	+2.6
4,012,755	+		Sama_3385	0.36	-1.5
4,012,756	-		Sama_3385	0.36	-0.4
4,012,756	-		Sama_3385	0.36	+0.2
4,012,756	-		Sama_3385	0.36	-2.0
4,012,840	+		Sama_3385	0.42	-0.7
4,012,840	+		Sama_3385	0.42	+0.0
4,012,840	+		Sama_3385	0.42	-0.5
4,012,840	+		Sama_3385	0.42	+0.5
4,012,840	+		Sama_3385	0.42	-2.7
4,012,840	+		Sama_3385	0.42	+1.9
4,012,840	+		Sama_3385	0.42	+0.9
4,012,840	+		Sama_3385	0.42	-0.7
4,012,840	+		Sama_3385	0.42	-0.7
4,012,841	-		Sama_3385	0.42	-0.3
4,012,841	-		Sama_3385	0.42	+1.1
4,012,841	-		Sama_3385	0.42	-1.0
4,012,841	-		Sama_3385	0.42	+0.3
4,012,841	-		Sama_3385	0.42	+0.6
4,012,855	+		Sama_3385	0.43	+0.0
4,012,855	+		Sama_3385	0.43	+0.5
4,012,855	+		Sama_3385	0.43	+1.1
4,012,855	+		Sama_3385	0.43	-1.5
4,012,856	-		Sama_3385	0.43	+0.3
4,012,856	-		Sama_3385	0.43	+0.8
4,012,856	-		Sama_3385	0.43	+1.1
4,013,040	+		Sama_3385	0.55	-0.6
4,013,040	+		Sama_3385	0.55	-0.4
4,013,041	-		Sama_3385	0.55	+0.1
4,013,041	-		Sama_3385	0.55	-1.0
4,013,041	-		Sama_3385	0.55	-1.5
4,013,044	+		Sama_3385	0.55	+1.6
4,013,044	+		Sama_3385	0.55	-0.1
4,013,044	+		Sama_3385	0.55	-1.0
4,013,045	-		Sama_3385	0.55	-0.3
4,013,045	-		Sama_3385	0.55	-0.7
4,013,045	-		Sama_3385	0.55	+1.2
4,013,045	-		Sama_3385	0.55	+0.0
4,013,045	-		Sama_3385	0.55	-1.1
4,013,045	-		Sama_3385	0.55	-0.7
4,013,045	-		Sama_3385	0.55	+1.4
4,013,068	-		Sama_3385	0.56	+1.4
4,013,068	-		Sama_3385	0.56	-1.8
4,013,072	+		Sama_3385	0.57	-0.5
4,013,072	+		Sama_3385	0.57	-3.5
4,013,072	+		Sama_3385	0.57	-2.5
4,013,072	+		Sama_3385	0.57	-1.2
4,013,073	-		Sama_3385	0.57	-0.2
4,013,073	-		Sama_3385	0.57	-2.4
4,013,073	-		Sama_3385	0.57	+0.4
4,013,073	-		Sama_3385	0.57	-0.7
4,013,073	-		Sama_3385	0.57	-1.9
4,013,113	-		Sama_3385	0.59	-0.3
4,013,127	+		Sama_3385	0.60	-2.8
4,013,127	+		Sama_3385	0.60	-0.7
4,013,128	-		Sama_3385	0.60	-1.5
4,013,128	-		Sama_3385	0.60	-2.1
4,013,128	-		Sama_3385	0.60	-0.9
4,013,128	-		Sama_3385	0.60	+0.9