Strain Fitness in Shewanella amazonensis SB2B around Sama_3340

Experiment: outer cut, LB soft agar motility assay

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	outer cut, LB soft agar motility assay
3,967,255	-		Sama_3338	0.38	-1.6
3,967,255	-		Sama_3338	0.38	-1.5
3,967,268	-		Sama_3338	0.40	-1.6
3,967,268	-		Sama_3338	0.40	-1.0
3,967,268	-		Sama_3338	0.40	+1.8
3,967,268	-		Sama_3338	0.40	-0.8
3,967,268	-		Sama_3338	0.40	-0.5
3,967,268	-		Sama_3338	0.40	-2.0
3,967,268	-		Sama_3338	0.40	-0.7
3,967,292	-		Sama_3338	0.46	+0.2
3,967,336	-		Sama_3338	0.55	+0.3
3,967,344	-		Sama_3338	0.57	+0.3
3,967,344	-		Sama_3338	0.57	-1.1
3,967,383	+		Sama_3338	0.65	+1.1
3,967,469	+		Sama_3338	0.84	+0.7
3,967,510	+				+0.6
3,967,511	-				-0.6
3,967,556	-				+1.5
3,967,556	-				-1.0
3,967,568	-				-2.5
3,967,585	+				+0.6
3,967,586	-				-2.4
3,967,600	+				-1.3
3,967,600	+				+1.1
3,967,725	+		Sama_3339	0.14	+1.5
3,967,725	+		Sama_3339	0.14	-1.1
3,967,726	-		Sama_3339	0.14	-1.6
3,967,726	-		Sama_3339	0.14	+0.6
3,967,766	+		Sama_3339	0.21	-1.0
3,967,766	+		Sama_3339	0.21	-2.8
3,967,766	+		Sama_3339	0.21	+0.7
3,967,766	+		Sama_3339	0.21	-1.5
3,967,767	-		Sama_3339	0.21	+2.6
3,967,823	+		Sama_3339	0.31	-1.5
3,967,823	+		Sama_3339	0.31	+1.3
3,967,824	-		Sama_3339	0.31	-2.0
3,967,889	+		Sama_3339	0.42	-3.2
3,967,889	+		Sama_3339	0.42	-0.1
3,967,889	+		Sama_3339	0.42	+0.8
3,967,889	+		Sama_3339	0.42	+1.3
3,967,915	+		Sama_3339	0.46	-0.8
3,967,915	+		Sama_3339	0.46	-2.0
3,967,916	-		Sama_3339	0.46	-0.3
3,967,919	+		Sama_3339	0.47	+0.3
3,967,919	+		Sama_3339	0.47	+2.1
3,967,919	+		Sama_3339	0.47	-2.8
3,967,920	-		Sama_3339	0.47	-1.0
3,967,970	+		Sama_3339	0.56	-1.7
3,967,971	-		Sama_3339	0.56	-0.7
3,967,971	-		Sama_3339	0.56	+0.7
3,967,980	-		Sama_3339	0.57	+1.7
3,968,005	+		Sama_3339	0.61	-1.0
3,968,005	+		Sama_3339	0.61	-1.4
3,968,006	-		Sama_3339	0.62	+0.9
3,968,006	-		Sama_3339	0.62	-0.7
3,968,012	+		Sama_3339	0.63	+3.4
3,968,013	-		Sama_3339	0.63	+0.3
3,968,013	-		Sama_3339	0.63	+0.8
3,968,013	-		Sama_3339	0.63	-1.3
3,968,013	-		Sama_3339	0.63	+2.1
3,968,046	-		Sama_3339	0.68	+0.7
3,968,062	+		Sama_3339	0.71	+2.6
3,968,062	+		Sama_3339	0.71	-1.1
3,968,062	+		Sama_3339	0.71	+0.6
3,968,062	+		Sama_3339	0.71	-0.9
3,968,062	+		Sama_3339	0.71	+0.5
3,968,062	+		Sama_3339	0.71	-2.3
3,968,062	+		Sama_3339	0.71	+0.6
3,968,062	+		Sama_3339	0.71	-1.8
3,968,062	+		Sama_3339	0.71	+0.2
3,968,062	+		Sama_3339	0.71	-0.1
3,968,062	+		Sama_3339	0.71	+0.7
3,968,063	-		Sama_3339	0.71	-1.3
3,968,063	-		Sama_3339	0.71	+0.2
3,968,063	-		Sama_3339	0.71	+1.2
3,968,063	-		Sama_3339	0.71	+0.5
3,968,087	+		Sama_3339	0.75	+0.6
3,968,087	+		Sama_3339	0.75	-0.1
3,968,087	+		Sama_3339	0.75	-1.8
3,968,087	+		Sama_3339	0.75	-0.3
3,968,087	+		Sama_3339	0.75	+0.2
3,968,087	+		Sama_3339	0.75	-0.1
3,968,087	+		Sama_3339	0.75	-2.1
3,968,087	+		Sama_3339	0.75	-2.8
3,968,087	+		Sama_3339	0.75	+0.7
3,968,088	-		Sama_3339	0.75	+0.2
3,968,088	-		Sama_3339	0.75	-2.9
3,968,088	-		Sama_3339	0.75	+0.0
3,968,088	-		Sama_3339	0.75	-3.6
3,968,088	-		Sama_3339	0.75	+0.6
3,968,088	-		Sama_3339	0.75	-1.5
3,968,088	-		Sama_3339	0.75	-1.5
3,968,088	-		Sama_3339	0.75	-1.8
3,968,088	-		Sama_3339	0.75	-2.8
3,968,122	-		Sama_3339	0.81	-0.1
3,968,122	-		Sama_3339	0.81	+1.4
3,968,162	+		Sama_3339	0.88	+0.3
3,968,162	+		Sama_3339	0.88	-1.3
3,968,162	+		Sama_3339	0.88	-0.5
3,968,201	-				+1.3
3,968,201	-				+1.7
3,968,201	-				+0.9
3,968,236	+				+1.6
3,968,237	-				-0.3
3,968,292	+				-2.1
3,968,293	-				+0.6
3,968,313	+				-0.1
3,968,313	+				+0.4
3,968,313	+				+0.2
3,968,313	+				-2.8
3,968,314	-				-1.3
3,968,314	-				-0.8
3,968,314	-				+0.7
3,968,314	-				-0.2
3,968,314	-				+2.6
3,968,314	-				+1.2
3,968,314	-				+0.2
3,968,337	+		Sama_3340	0.12	-0.3
3,968,337	+		Sama_3340	0.12	-1.8
3,968,337	+		Sama_3340	0.12	-0.9
3,968,337	+		Sama_3340	0.12	-1.0
3,968,337	+		Sama_3340	0.12	+1.3
3,968,337	+		Sama_3340	0.12	+1.7
3,968,338	-		Sama_3340	0.12	-0.5
3,968,338	-		Sama_3340	0.12	-0.2
3,968,338	-		Sama_3340	0.12	-0.2
3,968,338	-		Sama_3340	0.12	+0.8
3,968,338	-		Sama_3340	0.12	+0.4
3,968,338	-		Sama_3340	0.12	+1.6
3,968,338	-		Sama_3340	0.12	-1.8
3,968,385	+		Sama_3340	0.17	+1.9
3,968,385	+		Sama_3340	0.17	-0.7
3,968,385	+		Sama_3340	0.17	+2.3
3,968,385	+		Sama_3340	0.17	+0.4
3,968,385	+		Sama_3340	0.17	-0.8
3,968,385	+		Sama_3340	0.17	+1.4
3,968,385	+		Sama_3340	0.17	-1.0
3,968,385	+		Sama_3340	0.17	-1.3
3,968,386	-		Sama_3340	0.17	-0.2
3,968,386	-		Sama_3340	0.17	+0.2
3,968,393	+		Sama_3340	0.18	+0.1
3,968,401	+		Sama_3340	0.18	-0.8
3,968,402	-		Sama_3340	0.19	+0.7
3,968,402	-		Sama_3340	0.19	-3.1
3,968,412	+		Sama_3340	0.20	-0.3
3,968,412	+		Sama_3340	0.20	+0.5
3,968,412	+		Sama_3340	0.20	+0.8
3,968,412	+		Sama_3340	0.20	+1.9
3,968,412	+		Sama_3340	0.20	-0.7
3,968,412	+		Sama_3340	0.20	-0.7
3,968,412	+		Sama_3340	0.20	-0.8
3,968,412	+		Sama_3340	0.20	+1.3
3,968,412	+		Sama_3340	0.20	-2.9
3,968,413	-		Sama_3340	0.20	+0.3
3,968,413	-		Sama_3340	0.20	-1.8
3,968,413	-		Sama_3340	0.20	-0.3
3,968,413	-		Sama_3340	0.20	+0.4
3,968,413	-		Sama_3340	0.20	-0.8
3,968,413	-		Sama_3340	0.20	-1.1
3,968,413	-		Sama_3340	0.20	-1.0
3,968,444	-		Sama_3340	0.23	-3.1
3,968,473	+		Sama_3340	0.26	+1.3
3,968,473	+		Sama_3340	0.26	+1.4
3,968,473	+		Sama_3340	0.26	+2.1
3,968,474	-		Sama_3340	0.26	-0.6
3,968,490	+		Sama_3340	0.28	-2.1
3,968,491	-		Sama_3340	0.28	-2.8
3,968,491	-		Sama_3340	0.28	-2.1
3,968,546	+		Sama_3340	0.33	+1.2
3,968,546	+		Sama_3340	0.33	-0.3
3,968,547	-		Sama_3340	0.34	-0.7
3,968,547	-		Sama_3340	0.34	+1.2
3,968,547	-		Sama_3340	0.34	-0.5
3,968,547	-		Sama_3340	0.34	-1.0
3,968,568	+		Sama_3340	0.36	-1.3
3,968,568	+		Sama_3340	0.36	-1.8
3,968,568	+		Sama_3340	0.36	+0.1
3,968,568	+		Sama_3340	0.36	-0.4
3,968,568	+		Sama_3340	0.36	-1.5
3,968,569	-		Sama_3340	0.36	-0.3
3,968,569	-		Sama_3340	0.36	-1.6
3,968,569	-		Sama_3340	0.36	-2.4
3,968,569	-		Sama_3340	0.36	-2.5
3,968,612	+		Sama_3340	0.40	-1.6
3,968,612	+		Sama_3340	0.40	-2.4
3,968,613	-		Sama_3340	0.40	-1.2
3,968,723	+		Sama_3340	0.52	-1.2
3,968,780	-		Sama_3340	0.58	+2.9
3,968,794	+		Sama_3340	0.59	-0.7
3,968,794	+		Sama_3340	0.59	+0.7
3,968,795	-		Sama_3340	0.59	-0.6
3,968,871	+		Sama_3340	0.67	+0.3
3,968,871	+		Sama_3340	0.67	-0.4
3,968,871	+		Sama_3340	0.67	+2.6
3,968,871	+		Sama_3340	0.67	+0.5
3,968,871	+		Sama_3340	0.67	-0.8
3,968,871	+		Sama_3340	0.67	+1.0
3,968,871	+		Sama_3340	0.67	+0.6
3,968,871	+		Sama_3340	0.67	+0.1
3,968,871	+		Sama_3340	0.67	-0.6
3,968,871	+		Sama_3340	0.67	+0.4
3,968,871	+		Sama_3340	0.67	+0.3
3,968,871	+		Sama_3340	0.67	-1.3
3,968,871	+		Sama_3340	0.67	-0.2
3,968,872	-		Sama_3340	0.67	+1.6
3,968,872	-		Sama_3340	0.67	-0.4
3,968,872	-		Sama_3340	0.67	-0.4
3,968,872	-		Sama_3340	0.67	-0.3
3,968,872	-		Sama_3340	0.67	-1.8
3,968,872	-		Sama_3340	0.67	-2.8
3,968,872	-		Sama_3340	0.67	-1.8
3,968,876	+		Sama_3340	0.67	-2.8
3,968,876	+		Sama_3340	0.67	-0.2
3,968,876	+		Sama_3340	0.67	+0.2
3,968,876	+		Sama_3340	0.67	+0.1
3,968,876	+		Sama_3340	0.67	-2.1
3,968,876	+		Sama_3340	0.67	-1.0
3,968,876	+		Sama_3340	0.67	-2.0
3,968,876	+		Sama_3340	0.67	-0.5
3,968,877	-		Sama_3340	0.68	-1.0
3,968,877	-		Sama_3340	0.68	+0.1
3,968,877	-		Sama_3340	0.68	+0.6
3,968,877	-		Sama_3340	0.68	-0.3
3,968,877	-		Sama_3340	0.68	+1.1
3,968,877	-		Sama_3340	0.68	-2.3
3,968,877	-		Sama_3340	0.68	-2.0
3,969,161	+				-0.8
3,969,162	-				+0.7
3,969,162	-				+0.5
3,969,162	-				+1.3
3,969,162	-				+0.4
3,969,162	-				-0.1
3,969,162	-				-0.1
3,969,162	-				-1.4
3,969,162	-				+0.5
3,969,162	-				+0.4
3,969,165	+				-3.1
3,969,165	+				-0.3
3,969,165	+				-2.3
3,969,165	+				-2.3
3,969,165	+				+0.7
3,969,165	+				-0.7
3,969,165	+				-0.7
3,969,166	-				-1.8
3,969,166	-				+2.3
3,969,166	-				-1.8
3,969,166	-				-1.3
3,969,166	-				+0.0
3,969,166	-				-0.5
3,969,166	-				-0.1
3,969,166	-				-1.0
3,969,166	-				-2.0
3,969,166	-				+0.2
3,969,171	+				-0.5
3,969,171	+				-1.6
3,969,171	+				-0.7
3,969,172	-				+1.5
3,969,172	-				-0.9
3,969,172	-				-1.8
3,969,172	-				-0.1
3,969,172	-				+0.9
3,969,172	-				+0.4
3,969,172	-				-0.9
3,969,241	-				+0.2
3,969,241	-				+2.3
3,969,363	+				+1.5
3,969,367	-				-0.7
3,969,375	-				+1.9
3,969,447	+		Sama_3341	0.13	-0.1
3,969,448	-		Sama_3341	0.13	-2.8
3,969,448	-		Sama_3341	0.13	-1.1
3,969,448	-		Sama_3341	0.13	-3.6
3,969,488	+		Sama_3341	0.23	-1.6
3,969,488	+		Sama_3341	0.23	-1.7
3,969,489	-		Sama_3341	0.23	-0.6
3,969,489	-		Sama_3341	0.23	-3.4
3,969,489	-		Sama_3341	0.23	-0.2
3,969,489	-		Sama_3341	0.23	-0.4
3,969,489	-		Sama_3341	0.23	-1.5
3,969,501	+		Sama_3341	0.26	-0.4
3,969,598	+		Sama_3341	0.51	-0.3
3,969,599	-		Sama_3341	0.51	+1.2
3,969,599	-		Sama_3341	0.51	-2.6
3,969,604	+		Sama_3341	0.52	+1.5
3,969,604	+		Sama_3341	0.52	-1.7
3,969,604	+		Sama_3341	0.52	-1.3
3,969,604	+		Sama_3341	0.52	-1.8
3,969,604	+		Sama_3341	0.52	-0.1
3,969,605	-		Sama_3341	0.53	-2.4
3,969,605	-		Sama_3341	0.53	+1.2
3,969,605	-		Sama_3341	0.53	+1.6
3,969,605	-		Sama_3341	0.53	+0.0
3,969,657	+		Sama_3341	0.66	-1.3
3,969,657	+		Sama_3341	0.66	+0.5
3,969,756	+				+1.5
3,969,756	+				-0.2
3,969,757	-				-1.3
3,969,757	-				+2.6
3,969,861	+				-0.3
3,969,861	+				+1.1
3,969,861	+				-1.8
3,969,977	+		Sama_3342	0.16	+0.0
3,969,977	+		Sama_3342	0.16	+0.9
3,969,977	+		Sama_3342	0.16	-1.3
3,969,977	+		Sama_3342	0.16	-2.1
3,969,977	+		Sama_3342	0.16	-0.7
3,969,978	-		Sama_3342	0.16	+0.1
3,969,978	-		Sama_3342	0.16	+0.6
3,969,978	-		Sama_3342	0.16	+1.6
3,969,978	-		Sama_3342	0.16	-1.5
3,969,979	+		Sama_3342	0.16	-2.0
3,969,980	-		Sama_3342	0.16	+1.1
3,969,980	-		Sama_3342	0.16	+2.1
3,969,980	-		Sama_3342	0.16	+1.0
3,969,980	-		Sama_3342	0.16	+2.9
3,970,040	+		Sama_3342	0.21	+2.0
3,970,040	+		Sama_3342	0.21	+1.6
3,970,040	+		Sama_3342	0.21	-0.5
3,970,041	-		Sama_3342	0.21	-2.7
3,970,041	-		Sama_3342	0.21	-2.6
3,970,041	-		Sama_3342	0.21	+1.4
3,970,042	+		Sama_3342	0.21	-2.1
3,970,042	+		Sama_3342	0.21	-1.2
3,970,042	+		Sama_3342	0.21	-0.1
3,970,043	-		Sama_3342	0.21	-1.5
3,970,043	-		Sama_3342	0.21	+2.1
3,970,043	-		Sama_3342	0.21	-1.3
3,970,043	-		Sama_3342	0.21	+1.2
3,970,043	-		Sama_3342	0.21	+0.0
3,970,043	-		Sama_3342	0.21	-0.4
3,970,043	-		Sama_3342	0.21	+1.0
3,970,043	-		Sama_3342	0.21	+1.5
3,970,043	-		Sama_3342	0.21	-2.7
3,970,044	+		Sama_3342	0.21	-2.1
3,970,045	+		Sama_3342	0.21	-1.8
3,970,046	-		Sama_3342	0.22	-2.5
3,970,046	-		Sama_3342	0.22	+2.2
3,970,046	-		Sama_3342	0.22	-0.8
3,970,046	-		Sama_3342	0.22	-0.7
3,970,046	-		Sama_3342	0.22	-1.4
3,970,080	+		Sama_3342	0.24	-2.1
3,970,081	-		Sama_3342	0.24	-2.0
3,970,087	-		Sama_3342	0.25	-0.2
3,970,087	-		Sama_3342	0.25	-0.3
3,970,087	-		Sama_3342	0.25	+0.1
3,970,156	-		Sama_3342	0.31	-0.1