Strain Fitness in Shewanella amazonensis SB2B around Sama_3337

Experiment: outer cut, LB soft agar motility assay

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	outer cut, LB soft agar motility assay
3,964,559	+		Sama_3336	0.29	-0.3
3,964,560	-		Sama_3336	0.29	+0.9
3,964,560	-		Sama_3336	0.29	+0.3
3,964,583	+		Sama_3336	0.31	-1.0
3,964,583	+		Sama_3336	0.31	-0.2
3,964,584	-		Sama_3336	0.31	+0.6
3,964,584	-		Sama_3336	0.31	-3.1
3,964,619	+		Sama_3336	0.34	+0.1
3,964,619	+		Sama_3336	0.34	+1.4
3,964,619	+		Sama_3336	0.34	-0.6
3,964,620	-		Sama_3336	0.34	+1.2
3,964,622	+		Sama_3336	0.34	-0.5
3,964,622	+		Sama_3336	0.34	-1.5
3,964,622	+		Sama_3336	0.34	+1.0
3,964,622	+		Sama_3336	0.34	-0.3
3,964,622	+		Sama_3336	0.34	+2.5
3,964,623	-		Sama_3336	0.34	-1.1
3,964,623	-		Sama_3336	0.34	+0.7
3,964,623	-		Sama_3336	0.34	+1.2
3,964,667	+		Sama_3336	0.38	-2.8
3,964,778	+		Sama_3336	0.48	-0.3
3,964,779	-		Sama_3336	0.48	+1.1
3,964,801	+		Sama_3336	0.50	+0.2
3,964,866	-		Sama_3336	0.55	+0.9
3,964,866	-		Sama_3336	0.55	-1.5
3,964,866	-		Sama_3336	0.55	-0.6
3,964,866	-		Sama_3336	0.55	-1.3
3,964,898	-		Sama_3336	0.58	-0.7
3,964,936	+		Sama_3336	0.61	+1.2
3,964,945	+		Sama_3336	0.62	+1.6
3,964,946	-		Sama_3336	0.62	+0.8
3,965,000	+		Sama_3336	0.67	+2.9
3,965,000	+		Sama_3336	0.67	+3.4
3,965,000	+		Sama_3336	0.67	-1.9
3,965,000	+		Sama_3336	0.67	-0.7
3,965,001	-		Sama_3336	0.67	+0.3
3,965,001	-		Sama_3336	0.67	-0.4
3,965,009	+		Sama_3336	0.68	-1.3
3,965,010	-		Sama_3336	0.68	-0.3
3,965,010	-		Sama_3336	0.68	+0.2
3,965,010	-		Sama_3336	0.68	-0.6
3,965,010	-		Sama_3336	0.68	-1.0
3,965,010	-		Sama_3336	0.68	-2.4
3,965,013	-		Sama_3336	0.68	+0.0
3,965,013	-		Sama_3336	0.68	-0.1
3,965,013	-		Sama_3336	0.68	-1.7
3,965,015	-		Sama_3336	0.68	+2.4
3,965,019	-		Sama_3336	0.68	-0.1
3,965,019	-		Sama_3336	0.68	-1.3
3,965,048	+		Sama_3336	0.71	+1.9
3,965,048	+		Sama_3336	0.71	+0.9
3,965,049	-		Sama_3336	0.71	+0.2
3,965,091	+		Sama_3336	0.75	+0.6
3,965,092	-		Sama_3336	0.75	-1.8
3,965,105	+		Sama_3336	0.76	-2.1
3,965,106	-		Sama_3336	0.76	-1.8
3,965,106	-		Sama_3336	0.76	-1.4
3,965,106	-		Sama_3336	0.76	-0.3
3,965,180	+		Sama_3336	0.82	+0.2
3,965,180	+		Sama_3336	0.82	+0.9
3,965,180	+		Sama_3336	0.82	-2.0
3,965,181	-		Sama_3336	0.82	-1.5
3,965,181	-		Sama_3336	0.82	-2.5
3,965,181	-		Sama_3336	0.82	-1.5
3,965,181	-		Sama_3336	0.82	+1.1
3,965,181	-		Sama_3336	0.82	+1.0
3,965,207	-		Sama_3336	0.85	-2.4
3,965,207	-		Sama_3336	0.85	-0.9
3,965,258	+		Sama_3336	0.89	+3.8
3,965,259	-		Sama_3336	0.89	-1.0
3,965,264	+		Sama_3336	0.90	-0.3
3,965,264	+		Sama_3336	0.90	-1.0
3,965,264	+		Sama_3336	0.90	+1.9
3,965,264	+		Sama_3336	0.90	-2.2
3,965,264	+		Sama_3336	0.90	-1.8
3,965,264	+		Sama_3336	0.90	-0.3
3,965,265	-		Sama_3336	0.90	+1.0
3,965,265	-		Sama_3336	0.90	-1.3
3,965,265	-		Sama_3336	0.90	-2.5
3,965,265	-		Sama_3336	0.90	+1.9
3,965,265	-		Sama_3336	0.90	+2.2
3,965,265	-		Sama_3336	0.90	-1.7
3,965,265	-		Sama_3336	0.90	-0.3
3,965,275	+				-2.6
3,965,275	+				-1.9
3,965,369	-				+1.5
3,965,369	-				-2.1
3,965,372	+				+1.5
3,965,373	-				+1.5
3,965,373	-				-0.3
3,965,385	+				+0.0
3,965,385	+				-1.3
3,965,461	-				+1.1
3,965,504	+				+0.8
3,965,505	-				+1.5
3,965,547	+				+0.8
3,965,554	+				-0.3
3,965,584	+				+1.8
3,965,584	+				+1.9
3,965,584	+				+0.0
3,965,585	-				-2.1
3,965,585	-				-2.0
3,965,626	+				-1.6
3,965,626	+				+0.2
3,965,627	-				-0.3
3,965,627	-				-0.2
3,965,627	-				+0.6
3,965,647	+				-1.3
3,965,647	+				+0.0
3,965,648	-				-0.5
3,965,648	-				-0.8
3,965,648	-				-0.5
3,965,671	+				-1.7
3,965,671	+				-0.3
3,965,672	-				-1.8
3,965,805	-		Sama_3337	0.18	+0.3
3,965,805	-		Sama_3337	0.18	+0.4
3,965,805	-		Sama_3337	0.18	-1.3
3,965,834	+		Sama_3337	0.20	+0.4
3,965,835	-		Sama_3337	0.20	-0.9
3,965,835	-		Sama_3337	0.20	-2.1
3,965,835	-		Sama_3337	0.20	-0.8
3,965,835	-		Sama_3337	0.20	-0.8
3,965,835	-		Sama_3337	0.20	-0.7
3,965,851	+		Sama_3337	0.21	-0.2
3,965,851	+		Sama_3337	0.21	-1.6
3,965,857	+		Sama_3337	0.21	+0.7
3,965,858	-		Sama_3337	0.22	-3.3
3,965,858	-		Sama_3337	0.22	-0.3
3,965,870	+		Sama_3337	0.22	-1.8
3,965,870	+		Sama_3337	0.22	-1.3
3,965,870	+		Sama_3337	0.22	-1.7
3,965,870	+		Sama_3337	0.22	-1.2
3,965,870	+		Sama_3337	0.22	-0.3
3,965,870	+		Sama_3337	0.22	-2.6
3,965,870	+		Sama_3337	0.22	-0.3
3,965,870	+		Sama_3337	0.22	+0.0
3,965,870	+		Sama_3337	0.22	-2.1
3,965,871	-		Sama_3337	0.22	-2.1
3,966,007	+		Sama_3337	0.32	+2.7
3,966,007	+		Sama_3337	0.32	-2.1
3,966,008	-		Sama_3337	0.32	+2.9
3,966,008	-		Sama_3337	0.32	+0.5
3,966,008	-		Sama_3337	0.32	+1.1
3,966,014	-		Sama_3337	0.33	+0.5
3,966,014	-		Sama_3337	0.33	+0.7
3,966,014	-		Sama_3337	0.33	+0.5
3,966,031	+		Sama_3337	0.34	+2.2
3,966,032	-		Sama_3337	0.34	+1.8
3,966,086	-		Sama_3337	0.38	+2.2
3,966,121	+		Sama_3337	0.40	+1.3
3,966,121	+		Sama_3337	0.40	+1.3
3,966,121	+		Sama_3337	0.40	-0.7
3,966,121	+		Sama_3337	0.40	-0.5
3,966,121	+		Sama_3337	0.40	+0.2
3,966,121	+		Sama_3337	0.40	-1.0
3,966,121	+		Sama_3337	0.40	-3.0
3,966,121	+		Sama_3337	0.40	-0.2
3,966,121	+		Sama_3337	0.40	+1.4
3,966,121	+		Sama_3337	0.40	-0.9
3,966,121	+		Sama_3337	0.40	-1.6
3,966,122	-		Sama_3337	0.40	-0.3
3,966,122	-		Sama_3337	0.40	+2.1
3,966,122	-		Sama_3337	0.40	-1.7
3,966,122	-		Sama_3337	0.40	+0.3
3,966,122	-		Sama_3337	0.40	-0.3
3,966,125	+		Sama_3337	0.40	+0.1
3,966,125	+		Sama_3337	0.40	+1.3
3,966,125	+		Sama_3337	0.40	-0.7
3,966,126	-		Sama_3337	0.40	+0.8
3,966,168	+		Sama_3337	0.43	-0.8
3,966,168	+		Sama_3337	0.43	+0.9
3,966,168	+		Sama_3337	0.43	-0.3
3,966,168	+		Sama_3337	0.43	-0.2
3,966,169	-		Sama_3337	0.44	+0.2
3,966,169	-		Sama_3337	0.44	-2.3
3,966,169	-		Sama_3337	0.44	+0.5
3,966,172	+		Sama_3337	0.44	-0.1
3,966,172	+		Sama_3337	0.44	+0.8
3,966,296	+		Sama_3337	0.52	+0.6
3,966,296	+		Sama_3337	0.52	-0.4
3,966,296	+		Sama_3337	0.52	+1.6
3,966,296	+		Sama_3337	0.52	-1.4
3,966,297	-		Sama_3337	0.53	-2.3
3,966,297	-		Sama_3337	0.53	-1.6
3,966,438	-		Sama_3337	0.62	+0.9
3,966,438	-		Sama_3337	0.62	+0.6
3,966,438	-		Sama_3337	0.62	-0.8
3,966,532	+		Sama_3337	0.69	+0.9
3,966,532	+		Sama_3337	0.69	+1.3
3,966,571	+		Sama_3337	0.72	-1.2
3,966,571	+		Sama_3337	0.72	+0.9
3,966,571	+		Sama_3337	0.72	-0.2
3,966,571	+		Sama_3337	0.72	-1.5
3,966,572	-		Sama_3337	0.72	+0.8
3,966,572	-		Sama_3337	0.72	-0.5
3,966,572	-		Sama_3337	0.72	-2.0
3,966,572	-		Sama_3337	0.72	-1.0
3,966,572	-		Sama_3337	0.72	+0.5
3,966,632	+		Sama_3337	0.76	-0.3
3,966,638	+		Sama_3337	0.77	-1.0
3,966,639	-		Sama_3337	0.77	-0.3
3,966,646	+		Sama_3337	0.77	+1.1
3,966,647	-		Sama_3337	0.77	-2.3
3,966,757	+		Sama_3337	0.85	+0.5
3,966,836	+				-2.9
3,966,882	-				-1.5
3,966,903	+				+1.1
3,966,903	+				+0.3
3,966,903	+				+0.5
3,966,903	+				+0.6
3,966,903	+				+1.8
3,966,903	+				-0.9
3,966,903	+				-1.5
3,966,903	+				+1.2
3,966,903	+				-2.6
3,966,903	+				-0.8
3,966,904	-				+0.3
3,966,904	-				-2.1
3,966,904	-				-0.4
3,966,904	-				-1.3
3,966,904	-				+0.3
3,966,904	-				-2.1
3,966,904	-				+0.1
3,966,904	-				-2.4
3,966,904	-				+3.6
3,966,904	-				+0.3
3,966,904	-				-1.0
3,966,921	+				+2.8
3,966,922	-				-0.2
3,966,949	+				-0.4
3,966,950	-				-1.2
3,967,001	+				-0.2
3,967,001	+				-1.7
3,967,001	+				+0.3
3,967,001	+				+1.0
3,967,001	+				-1.7
3,967,001	+				-0.0
3,967,001	+				-1.0
3,967,001	+				-1.7
3,967,001	+				-0.7
3,967,001	+				+1.7
3,967,001	+				-1.3
3,967,001	+				-1.7
3,967,002	-				-0.0
3,967,002	-				+2.9
3,967,002	-				-0.5
3,967,002	-				-0.3
3,967,002	-				+1.0
3,967,002	-				-0.5
3,967,002	-				+1.6
3,967,002	-				+1.5
3,967,002	-				-1.1
3,967,004	-				-1.4
3,967,020	+				-1.4
3,967,021	-				-1.8
3,967,021	-				+1.5
3,967,021	-				-2.5
3,967,081	+				+1.2
3,967,081	+				+0.1
3,967,082	-				-1.4
3,967,082	-				+0.3
3,967,082	-				+2.2
3,967,106	+				+0.1
3,967,107	-				+1.4
3,967,107	-				+0.2
3,967,107	-				-4.0
3,967,107	-				-1.1
3,967,107	-				+2.9
3,967,107	-				-1.5
3,967,107	-				+1.7
3,967,107	-				+0.1
3,967,107	-				-1.5
3,967,107	-				-2.7
3,967,108	+				-1.7
3,967,108	+				+1.3
3,967,108	+				+1.4
3,967,109	-				-1.6
3,967,109	-				-0.7
3,967,109	-				-2.7
3,967,109	-				+0.3
3,967,163	+		Sama_3338	0.18	+2.6
3,967,164	-		Sama_3338	0.18	-1.9
3,967,164	-		Sama_3338	0.18	-0.9
3,967,164	-		Sama_3338	0.18	-1.3
3,967,255	-		Sama_3338	0.38	-1.6
3,967,255	-		Sama_3338	0.38	-1.5
3,967,268	-		Sama_3338	0.40	-1.6
3,967,268	-		Sama_3338	0.40	-1.0
3,967,268	-		Sama_3338	0.40	+1.8
3,967,268	-		Sama_3338	0.40	-0.8
3,967,268	-		Sama_3338	0.40	-0.5
3,967,268	-		Sama_3338	0.40	-2.0
3,967,268	-		Sama_3338	0.40	-0.7
3,967,292	-		Sama_3338	0.46	+0.2
3,967,336	-		Sama_3338	0.55	+0.3
3,967,344	-		Sama_3338	0.57	+0.3
3,967,344	-		Sama_3338	0.57	-1.1
3,967,383	+		Sama_3338	0.65	+1.1
3,967,469	+		Sama_3338	0.84	+0.7
3,967,510	+				+0.6
3,967,511	-				-0.6
3,967,556	-				+1.5
3,967,556	-				-1.0
3,967,568	-				-2.5
3,967,585	+				+0.6
3,967,586	-				-2.4
3,967,600	+				-1.3
3,967,600	+				+1.1
3,967,725	+		Sama_3339	0.14	+1.5
3,967,725	+		Sama_3339	0.14	-1.1
3,967,726	-		Sama_3339	0.14	-1.6
3,967,726	-		Sama_3339	0.14	+0.6
3,967,766	+		Sama_3339	0.21	-1.0
3,967,766	+		Sama_3339	0.21	-2.8
3,967,766	+		Sama_3339	0.21	+0.7
3,967,766	+		Sama_3339	0.21	-1.5
3,967,767	-		Sama_3339	0.21	+2.6
3,967,823	+		Sama_3339	0.31	-1.5
3,967,823	+		Sama_3339	0.31	+1.3
3,967,824	-		Sama_3339	0.31	-2.0
3,967,889	+		Sama_3339	0.42	-3.2
3,967,889	+		Sama_3339	0.42	-0.1
3,967,889	+		Sama_3339	0.42	+0.8
3,967,889	+		Sama_3339	0.42	+1.3
3,967,915	+		Sama_3339	0.46	-0.8
3,967,915	+		Sama_3339	0.46	-2.0
3,967,916	-		Sama_3339	0.46	-0.3
3,967,919	+		Sama_3339	0.47	+0.3
3,967,919	+		Sama_3339	0.47	+2.1
3,967,919	+		Sama_3339	0.47	-2.8
3,967,920	-		Sama_3339	0.47	-1.0