Strain Fitness in Shewanella amazonensis SB2B around Sama_2687

Experiment: outer cut, LB soft agar motility assay

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	outer cut, LB soft agar motility assay
3,214,957	+		Sama_2685	0.82	+1.9
3,214,958	-		Sama_2685	0.82	+2.4
3,214,965	+		Sama_2685	0.83	-1.4
3,214,965	+		Sama_2685	0.83	-1.7
3,215,303	+		Sama_2686	0.29	+0.8
3,215,304	-		Sama_2686	0.29	-1.5
3,215,437	+		Sama_2686	0.54	+1.0
3,215,438	-		Sama_2686	0.54	+0.1
3,215,438	-		Sama_2686	0.54	-3.0
3,215,470	-		Sama_2686	0.60	+0.1
3,215,509	+		Sama_2686	0.68	-3.0
3,215,510	-		Sama_2686	0.68	+0.6
3,215,510	-		Sama_2686	0.68	-2.1
3,215,572	-		Sama_2686	0.80	+1.1
3,215,701	+				+0.3
3,215,701	+				-0.6
3,215,701	+				-2.1
3,215,701	+				+2.1
3,215,702	-				+0.2
3,215,722	+				-1.9
3,215,722	+				-2.2
3,215,723	-				-0.1
3,215,766	-				-1.7
3,215,766	-				+2.1
3,215,796	+				+0.1
3,215,797	-				+1.1
3,215,797	-				-0.1
3,215,797	-				-1.5
3,215,797	-				+0.7
3,215,818	+				+2.7
3,215,818	+				+1.0
3,215,818	+				-2.9
3,215,818	+				+1.6
3,215,819	-				-0.9
3,215,819	-				+1.4
3,215,819	-				+1.9
3,215,819	-				+1.2
3,215,845	+				+1.5
3,215,845	+				+0.0
3,215,845	+				+1.9
3,215,845	+				+0.5
3,215,974	+				-3.1
3,215,974	+				+2.1
3,215,975	-				-0.3
3,215,981	+				-0.1
3,215,981	+				-2.9
3,215,982	-				+1.7
3,215,983	+				+1.3
3,215,983	+				+1.1
3,215,984	-				+2.7
3,215,984	-				+0.3
3,215,984	-				+0.8
3,215,984	-				-1.7
3,215,984	-				+1.6
3,215,984	-				+1.3
3,215,984	-				+2.7
3,216,021	+				+2.9
3,216,022	-				+2.1
3,216,086	-		Sama_2687	0.10	-1.9
3,216,086	-		Sama_2687	0.10	-1.5
3,216,151	+		Sama_2687	0.14	+3.4
3,216,207	-		Sama_2687	0.18	+1.3
3,216,207	-		Sama_2687	0.18	-1.8
3,216,207	-		Sama_2687	0.18	+1.5
3,216,215	+		Sama_2687	0.18	-1.0
3,216,215	+		Sama_2687	0.18	+0.6
3,216,215	+		Sama_2687	0.18	+1.9
3,216,215	+		Sama_2687	0.18	+1.4
3,216,216	-		Sama_2687	0.18	+1.9
3,216,240	+		Sama_2687	0.20	-0.7
3,216,240	+		Sama_2687	0.20	-0.9
3,216,240	+		Sama_2687	0.20	+1.4
3,216,241	-		Sama_2687	0.20	+0.1
3,216,252	+		Sama_2687	0.21	-0.5
3,216,253	-		Sama_2687	0.21	+0.5
3,216,253	-		Sama_2687	0.21	-0.2
3,216,256	+		Sama_2687	0.21	+1.0
3,216,257	-		Sama_2687	0.21	-1.1
3,216,257	-		Sama_2687	0.21	-0.5
3,216,257	-		Sama_2687	0.21	+2.1
3,216,257	-		Sama_2687	0.21	-1.2
3,216,537	+		Sama_2687	0.38	-2.2
3,216,537	+		Sama_2687	0.38	+2.2
3,216,538	-		Sama_2687	0.39	+0.1
3,216,544	+		Sama_2687	0.39	+0.1
3,216,544	+		Sama_2687	0.39	-0.9
3,216,585	+		Sama_2687	0.41	-1.9
3,216,657	+		Sama_2687	0.46	+2.5
3,216,658	-		Sama_2687	0.46	-0.7
3,216,699	+		Sama_2687	0.49	+0.0
3,216,745	+		Sama_2687	0.51	-1.6
3,216,745	+		Sama_2687	0.51	+1.4
3,216,745	+		Sama_2687	0.51	+2.1
3,216,745	+		Sama_2687	0.51	-1.9
3,216,745	+		Sama_2687	0.51	-0.6
3,216,746	-		Sama_2687	0.51	-1.0
3,216,824	-		Sama_2687	0.56	+1.6
3,216,844	+		Sama_2687	0.58	+0.1
3,216,845	-		Sama_2687	0.58	+0.3
3,216,899	+		Sama_2687	0.61	-1.9
3,216,899	+		Sama_2687	0.61	+1.3
3,216,899	+		Sama_2687	0.61	+2.2
3,216,903	+		Sama_2687	0.61	-1.9
3,216,903	+		Sama_2687	0.61	+0.8
3,216,903	+		Sama_2687	0.61	+2.7
3,216,903	+		Sama_2687	0.61	+2.4
3,216,904	-		Sama_2687	0.61	+2.8
3,216,904	-		Sama_2687	0.61	+2.6
3,216,904	-		Sama_2687	0.61	-1.2
3,216,904	-		Sama_2687	0.61	-0.5
3,216,904	-		Sama_2687	0.61	-3.2
3,216,904	-		Sama_2687	0.61	+0.8
3,217,006	+		Sama_2687	0.68	+1.4
3,217,007	-		Sama_2687	0.68	+0.4
3,217,007	-		Sama_2687	0.68	-1.2
3,217,102	+		Sama_2687	0.74	-3.5
3,217,102	+		Sama_2687	0.74	-0.9
3,217,102	+		Sama_2687	0.74	-1.1
3,217,103	-		Sama_2687	0.74	+2.1
3,217,103	-		Sama_2687	0.74	-2.8
3,217,103	-		Sama_2687	0.74	+3.5
3,217,103	-		Sama_2687	0.74	+0.2
3,217,103	-		Sama_2687	0.74	+1.1
3,217,103	-		Sama_2687	0.74	-1.5
3,217,126	+		Sama_2687	0.75	-0.3
3,217,127	-		Sama_2687	0.75	-1.2
3,217,127	-		Sama_2687	0.75	-1.9
3,217,318	+		Sama_2687	0.87	+1.0
3,217,319	-		Sama_2687	0.87	-1.1
3,217,319	-		Sama_2687	0.87	+0.9
3,217,342	+		Sama_2687	0.89	+1.6
3,217,490	-				+0.4
3,217,490	-				+1.2
3,217,520	+				-1.1
3,217,543	-				-1.4
3,217,572	-				+2.1
3,217,606	+				-2.9
3,217,632	+				-1.5
3,217,632	+				-0.5
3,217,632	+				-0.0
3,217,633	-				-0.5
3,217,633	-				+1.5
3,217,633	-				-2.2
3,217,633	-				-1.1
3,217,633	-				-2.7
3,217,633	-				+1.2
3,217,682	+		Sama_2688	0.14	-0.7
3,217,682	+		Sama_2688	0.14	-0.5
3,217,682	+		Sama_2688	0.14	-0.3
3,217,682	+		Sama_2688	0.14	+0.1
3,217,682	+		Sama_2688	0.14	-0.5
3,217,682	+		Sama_2688	0.14	+0.2
3,217,682	+		Sama_2688	0.14	+0.1
3,217,683	-		Sama_2688	0.14	-1.5
3,217,683	-		Sama_2688	0.14	+2.3
3,217,748	+		Sama_2688	0.25	-0.1
3,217,804	-		Sama_2688	0.35	+0.5
3,217,804	-		Sama_2688	0.35	+0.5
3,217,804	-		Sama_2688	0.35	+2.2
3,217,897	+		Sama_2688	0.51	+2.2
3,217,898	-		Sama_2688	0.52	+1.2
3,218,062	+		Sama_2688	0.81	+1.0
3,218,062	+		Sama_2688	0.81	+1.1
3,218,063	-		Sama_2688	0.81	-0.1
3,218,063	-		Sama_2688	0.81	+0.9
3,218,063	-		Sama_2688	0.81	-1.7
3,218,063	-		Sama_2688	0.81	+1.1
3,218,067	-		Sama_2688	0.81	-3.2
3,218,171	+				+0.1
3,218,172	-				-1.5
3,218,172	-				-1.4
3,218,172	-				-1.5
3,218,183	+				-1.2
3,218,328	+		Sama_2689	0.20	+0.1
3,218,329	-		Sama_2689	0.20	-1.2
3,218,397	+		Sama_2689	0.29	-2.7
3,218,399	+		Sama_2689	0.29	+2.6
3,218,399	+		Sama_2689	0.29	+1.6
3,218,399	+		Sama_2689	0.29	+2.2
3,218,399	+		Sama_2689	0.29	-0.4
3,218,399	+		Sama_2689	0.29	-0.7
3,218,399	+		Sama_2689	0.29	-0.5
3,218,400	-		Sama_2689	0.29	+0.2
3,218,400	-		Sama_2689	0.29	+3.4
3,218,400	-		Sama_2689	0.29	-0.3
3,218,400	-		Sama_2689	0.29	+0.6
3,218,400	-		Sama_2689	0.29	+0.5
3,218,454	+		Sama_2689	0.36	+1.1
3,218,454	+		Sama_2689	0.36	+0.1
3,218,454	+		Sama_2689	0.36	-0.5
3,218,455	-		Sama_2689	0.37	+0.4
3,218,455	-		Sama_2689	0.37	+0.6