Strain Fitness in Shewanella amazonensis SB2B around Sama_2648

Experiment: outer cut, LB soft agar motility assay

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	outer cut, LB soft agar motility assay
3,171,632	+		Sama_2647	0.28	-3.3
3,171,633	-		Sama_2647	0.28	+0.8
3,171,657	+		Sama_2647	0.30	+0.8
3,171,658	-		Sama_2647	0.30	-1.9
3,171,686	+		Sama_2647	0.32	-2.4
3,171,769	+		Sama_2647	0.39	-0.7
3,171,769	+		Sama_2647	0.39	-1.2
3,171,769	+		Sama_2647	0.39	+0.1
3,171,770	-		Sama_2647	0.39	+2.1
3,171,781	+		Sama_2647	0.40	+0.3
3,171,781	+		Sama_2647	0.40	+0.9
3,171,781	+		Sama_2647	0.40	+1.3
3,171,781	+		Sama_2647	0.40	+1.2
3,171,781	+		Sama_2647	0.40	+0.1
3,171,782	-		Sama_2647	0.40	-0.1
3,171,795	+		Sama_2647	0.41	-0.9
3,171,920	+		Sama_2647	0.50	+0.7
3,171,920	+		Sama_2647	0.50	-1.7
3,171,920	+		Sama_2647	0.50	-2.1
3,171,921	-		Sama_2647	0.50	-2.5
3,171,975	+		Sama_2647	0.54	-0.5
3,171,999	+		Sama_2647	0.56	-2.5
3,171,999	+		Sama_2647	0.56	+0.1
3,171,999	+		Sama_2647	0.56	-2.1
3,171,999	+		Sama_2647	0.56	-0.7
3,172,003	+		Sama_2647	0.56	-1.5
3,172,003	+		Sama_2647	0.56	+0.8
3,172,003	+		Sama_2647	0.56	+1.1
3,172,003	+		Sama_2647	0.56	+1.5
3,172,003	+		Sama_2647	0.56	+2.0
3,172,004	-		Sama_2647	0.57	-0.0
3,172,004	-		Sama_2647	0.57	+0.3
3,172,004	-		Sama_2647	0.57	-0.2
3,172,004	-		Sama_2647	0.57	-0.5
3,172,023	+		Sama_2647	0.58	-0.4
3,172,023	+		Sama_2647	0.58	-1.2
3,172,023	+		Sama_2647	0.58	-1.1
3,172,023	+		Sama_2647	0.58	+0.1
3,172,023	+		Sama_2647	0.58	-1.5
3,172,024	-		Sama_2647	0.58	-1.5
3,172,024	-		Sama_2647	0.58	-0.8
3,172,039	+		Sama_2647	0.59	+0.1
3,172,056	+		Sama_2647	0.61	+1.1
3,172,056	+		Sama_2647	0.61	-0.5
3,172,056	+		Sama_2647	0.61	-1.3
3,172,056	+		Sama_2647	0.61	+0.7
3,172,056	+		Sama_2647	0.61	-1.6
3,172,057	-		Sama_2647	0.61	+1.7
3,172,057	-		Sama_2647	0.61	-2.0
3,172,057	-		Sama_2647	0.61	-1.0
3,172,057	-		Sama_2647	0.61	-1.2
3,172,057	-		Sama_2647	0.61	+1.3
3,172,057	-		Sama_2647	0.61	+0.1
3,172,057	-		Sama_2647	0.61	+0.6
3,172,068	-		Sama_2647	0.61	-1.7
3,172,079	-		Sama_2647	0.62	-1.0
3,172,116	-		Sama_2647	0.65	-1.5
3,172,149	+		Sama_2647	0.68	+0.9
3,172,149	+		Sama_2647	0.68	+1.6
3,172,150	-		Sama_2647	0.68	-0.5
3,172,200	+		Sama_2647	0.72	+0.5
3,172,200	+		Sama_2647	0.72	-1.7
3,172,200	+		Sama_2647	0.72	-0.9
3,172,201	-		Sama_2647	0.72	+0.3
3,172,201	-		Sama_2647	0.72	+0.8
3,172,201	-		Sama_2647	0.72	-0.5
3,172,225	+		Sama_2647	0.73	-0.6
3,172,225	+		Sama_2647	0.73	+0.3
3,172,225	+		Sama_2647	0.73	-1.3
3,172,226	-		Sama_2647	0.74	+0.7
3,172,226	-		Sama_2647	0.74	+1.3
3,172,226	-		Sama_2647	0.74	-0.9
3,172,226	-		Sama_2647	0.74	+0.5
3,172,226	-		Sama_2647	0.74	-0.7
3,172,258	+		Sama_2647	0.76	-1.8
3,172,258	+		Sama_2647	0.76	-1.8
3,172,259	-		Sama_2647	0.76	-1.7
3,172,290	+		Sama_2647	0.78	+0.3
3,172,290	+		Sama_2647	0.78	+1.6
3,172,291	-		Sama_2647	0.79	+1.1
3,172,330	+		Sama_2647	0.81	+2.1
3,172,330	+		Sama_2647	0.81	-1.5
3,172,383	+		Sama_2647	0.86	+0.5
3,172,410	+		Sama_2647	0.88	-0.9
3,172,412	+		Sama_2647	0.88	+2.4
3,172,412	+		Sama_2647	0.88	-1.8
3,172,412	+		Sama_2647	0.88	+0.7
3,172,412	+		Sama_2647	0.88	+1.5
3,172,412	+		Sama_2647	0.88	-1.5
3,172,413	-		Sama_2647	0.88	-0.6
3,172,413	-		Sama_2647	0.88	-1.5
3,172,413	-		Sama_2647	0.88	-1.8
3,172,413	-		Sama_2647	0.88	+1.4
3,172,468	+				+0.7
3,172,468	+				+1.1
3,172,468	+				-1.2
3,172,546	-				-2.2
3,172,556	+				-1.4
3,172,557	-				+1.1
3,172,570	-				-2.2
3,172,577	+				-1.2
3,172,577	+				-0.3
3,172,577	+				-0.9
3,172,578	-				+0.9
3,172,642	-				+0.1
3,172,666	+				-1.9
3,172,667	-				-1.2
3,172,667	-				-1.2
3,172,715	+				-1.5
3,172,715	+				+1.1
3,172,715	+				+0.4
3,172,715	+				-0.9
3,172,716	-				-0.3
3,172,716	-				-0.0
3,172,716	-				+0.2
3,172,717	+				-0.9
3,172,717	+				+0.6
3,172,718	-				-0.5
3,172,718	-				-2.1
3,172,718	-				-0.2
3,172,718	-				+2.1
3,172,740	-				+0.4
3,172,753	+				-0.3
3,172,761	-				+1.4
3,172,761	-				+0.2
3,172,761	-				-1.8
3,172,761	-				+0.4
3,172,767	+				+1.1
3,172,768	-				-1.7
3,172,800	-		Sama_2648	0.11	-0.2
3,172,815	-		Sama_2648	0.12	-0.1
3,172,846	+		Sama_2648	0.14	-2.1
3,172,847	-		Sama_2648	0.14	+0.1
3,172,854	-		Sama_2648	0.15	-1.3
3,172,865	+		Sama_2648	0.16	-1.2
3,172,865	+		Sama_2648	0.16	+2.0
3,172,866	-		Sama_2648	0.16	-1.2
3,172,866	-		Sama_2648	0.16	-0.6
3,172,866	-		Sama_2648	0.16	-1.2
3,172,866	-		Sama_2648	0.16	+0.8
3,172,884	-		Sama_2648	0.17	-1.9
3,172,884	-		Sama_2648	0.17	-0.4
3,172,981	+		Sama_2648	0.23	+0.4
3,172,981	+		Sama_2648	0.23	+0.1
3,172,981	+		Sama_2648	0.23	+0.9
3,172,981	+		Sama_2648	0.23	-1.9
3,172,981	+		Sama_2648	0.23	+1.7
3,172,981	+		Sama_2648	0.23	-0.9
3,172,981	+		Sama_2648	0.23	-0.2
3,172,981	+		Sama_2648	0.23	+1.0
3,172,981	+		Sama_2648	0.23	+1.2
3,172,981	+		Sama_2648	0.23	-1.5
3,172,981	+		Sama_2648	0.23	+0.2
3,172,981	+		Sama_2648	0.23	-1.2
3,172,982	-		Sama_2648	0.23	-1.6
3,172,982	-		Sama_2648	0.23	+0.3
3,172,982	-		Sama_2648	0.23	+0.3
3,172,982	-		Sama_2648	0.23	-0.7
3,172,982	-		Sama_2648	0.23	+1.7
3,172,982	-		Sama_2648	0.23	+0.4
3,172,982	-		Sama_2648	0.23	-0.9
3,172,982	-		Sama_2648	0.23	-1.1
3,172,982	-		Sama_2648	0.23	-1.4
3,172,982	-		Sama_2648	0.23	-1.8
3,172,982	-		Sama_2648	0.23	-1.2
3,172,982	-		Sama_2648	0.23	+4.2
3,172,982	-		Sama_2648	0.23	+0.6
3,172,983	+		Sama_2648	0.23	-0.5
3,172,983	+		Sama_2648	0.23	+5.0
3,172,983	+		Sama_2648	0.23	-0.2
3,172,983	+		Sama_2648	0.23	+1.0
3,172,983	+		Sama_2648	0.23	+0.1
3,172,983	+		Sama_2648	0.23	+0.5
3,172,983	+		Sama_2648	0.23	+2.1
3,172,983	+		Sama_2648	0.23	-0.4
3,172,983	+		Sama_2648	0.23	-0.2
3,172,983	+		Sama_2648	0.23	-1.2
3,172,984	-		Sama_2648	0.24	+1.4
3,172,984	-		Sama_2648	0.24	+0.1
3,172,984	-		Sama_2648	0.24	+1.2
3,172,984	-		Sama_2648	0.24	+0.0
3,172,984	-		Sama_2648	0.24	+3.1
3,172,984	-		Sama_2648	0.24	-3.0
3,172,984	-		Sama_2648	0.24	-1.2
3,172,984	-		Sama_2648	0.24	+1.3
3,172,984	-		Sama_2648	0.24	+0.1
3,173,057	+		Sama_2648	0.28	+1.5
3,173,057	+		Sama_2648	0.28	+1.8
3,173,058	-		Sama_2648	0.28	-1.9
3,173,058	-		Sama_2648	0.28	-1.4
3,173,059	+		Sama_2648	0.29	+1.1
3,173,059	+		Sama_2648	0.29	+2.1
3,173,060	-		Sama_2648	0.29	-1.7
3,173,060	-		Sama_2648	0.29	-0.5
3,173,091	+		Sama_2648	0.31	+0.5
3,173,091	+		Sama_2648	0.31	+2.0
3,173,092	-		Sama_2648	0.31	-2.1
3,173,092	-		Sama_2648	0.31	-0.5
3,173,162	+		Sama_2648	0.35	-1.7
3,173,163	-		Sama_2648	0.35	+1.4
3,173,168	+		Sama_2648	0.36	-0.9
3,173,168	+		Sama_2648	0.36	+1.7
3,173,169	-		Sama_2648	0.36	+0.4
3,173,169	-		Sama_2648	0.36	+1.3
3,173,237	+		Sama_2648	0.40	+2.6
3,173,298	+		Sama_2648	0.44	-0.5
3,173,303	+		Sama_2648	0.45	-0.9
3,173,303	+		Sama_2648	0.45	-1.0
3,173,345	+		Sama_2648	0.48	+1.2
3,173,346	-		Sama_2648	0.48	-1.2
3,173,362	+		Sama_2648	0.49	-1.7
3,173,362	+		Sama_2648	0.49	+0.7
3,173,362	+		Sama_2648	0.49	-3.5
3,173,362	+		Sama_2648	0.49	-2.9
3,173,363	-		Sama_2648	0.49	-0.9
3,173,363	-		Sama_2648	0.49	+1.2
3,173,363	-		Sama_2648	0.49	+2.2
3,173,363	-		Sama_2648	0.49	-1.4
3,173,363	-		Sama_2648	0.49	-0.8
3,173,363	-		Sama_2648	0.49	-1.2
3,173,363	-		Sama_2648	0.49	-1.2
3,173,363	-		Sama_2648	0.49	-0.2
3,173,403	+		Sama_2648	0.52	-2.5
3,173,404	-		Sama_2648	0.52	-2.8
3,173,404	-		Sama_2648	0.52	-0.2
3,173,412	-		Sama_2648	0.52	-0.6
3,173,412	-		Sama_2648	0.52	-0.7
3,173,412	-		Sama_2648	0.52	+0.6
3,173,423	+		Sama_2648	0.53	-0.2
3,173,423	+		Sama_2648	0.53	-0.4
3,173,424	-		Sama_2648	0.53	-0.1
3,173,424	-		Sama_2648	0.53	-2.6
3,173,424	-		Sama_2648	0.53	+0.8
3,173,424	-		Sama_2648	0.53	-0.5
3,173,478	+		Sama_2648	0.57	+2.5
3,173,519	+		Sama_2648	0.59	-1.9
3,173,519	+		Sama_2648	0.59	+0.6
3,173,520	-		Sama_2648	0.59	+0.4
3,173,520	-		Sama_2648	0.59	-0.2
3,173,520	-		Sama_2648	0.59	+0.5
3,173,520	-		Sama_2648	0.59	+1.6
3,173,570	+		Sama_2648	0.63	+0.4
3,173,571	-		Sama_2648	0.63	+1.1
3,173,571	-		Sama_2648	0.63	+0.9
3,173,796	-		Sama_2648	0.78	-0.5
3,173,796	-		Sama_2648	0.78	+1.5
3,173,801	+		Sama_2648	0.78	-2.1
3,173,802	-		Sama_2648	0.78	+1.7
3,173,877	-		Sama_2648	0.83	+0.9
3,173,986	-				-1.9
3,174,043	+				-0.3
3,174,043	+				+1.8
3,174,066	-				-3.2
3,174,122	+				-0.6
3,174,122	+				+0.1
3,174,123	-				-1.2
3,174,139	+				-1.2
3,174,140	-				-0.8
3,174,140	-				-1.0
3,174,140	-				+1.2
3,174,153	-				-1.7
3,174,153	-				+0.1
3,174,153	-				+1.0
3,174,158	+				+2.2
3,174,158	+				+3.3
3,174,276	+				-0.2
3,174,414	-				+0.3
3,174,414	-				+1.1
3,174,414	-				+0.4
3,174,453	-				+0.1
3,174,464	+				+1.1
3,174,465	-				-0.5
3,174,467	+				-1.7
3,174,496	-				+1.0
3,174,506	+				-1.7
3,174,506	+				-1.3
3,174,506	+				-2.3
3,174,507	-				+0.6
3,174,510	+				-0.2
3,174,510	+				-1.2
3,174,510	+				-0.5
3,174,510	+				-0.5
3,174,510	+				-0.0
3,174,510	+				-0.1
3,174,510	+				+1.7
3,174,510	+				-0.9
3,174,510	+				+1.6
3,174,510	+				-1.5
3,174,510	+				+0.4
3,174,511	-				-1.2
3,174,511	-				-0.5
3,174,511	-				-2.5
3,174,511	-				-1.5
3,174,511	-				-0.1
3,174,511	-				-2.1
3,174,511	-				-1.0
3,174,515	+				+0.1
3,174,515	+				-4.1
3,174,515	+				-0.5
3,174,515	+				-2.6
3,174,516	-				-0.8
3,174,516	-				+0.9
3,174,516	-				-1.3
3,174,516	-				+1.1
3,174,516	-				+1.3
3,174,516	-				+1.8
3,174,516	-				+0.5
3,174,516	-				-1.5
3,174,516	-				+3.1
3,174,536	+				-0.9
3,174,536	+				-1.7
3,174,536	+				-0.2
3,174,537	-				+1.2
3,174,568	-				+0.5
3,174,635	+				-1.7
3,174,643	-				-1.8
3,174,668	-		Sama_2649	0.11	-0.4
3,174,698	+		Sama_2649	0.14	+0.5
3,174,699	-		Sama_2649	0.14	-3.0
3,174,699	-		Sama_2649	0.14	-0.9
3,174,762	+		Sama_2649	0.18	-0.9
3,174,762	+		Sama_2649	0.18	-3.2
3,174,826	+		Sama_2649	0.23	+1.7
3,174,826	+		Sama_2649	0.23	-0.4
3,174,826	+		Sama_2649	0.23	-1.2
3,174,827	-		Sama_2649	0.23	-1.5
3,174,827	-		Sama_2649	0.23	-0.9
3,174,827	-		Sama_2649	0.23	+0.0
3,174,857	+		Sama_2649	0.25	-1.5
3,174,857	+		Sama_2649	0.25	-1.7
3,174,858	-		Sama_2649	0.26	-1.2
3,174,858	-		Sama_2649	0.26	+1.1