Strain Fitness in Shewanella amazonensis SB2B around Sama_2445

Experiment: outer cut, LB soft agar motility assay

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	outer cut, LB soft agar motility assay
2,941,477	-		Sama_2444	0.25	-1.5
2,941,509	+		Sama_2444	0.28	+0.8
2,941,509	+		Sama_2444	0.28	-0.7
2,941,510	-		Sama_2444	0.28	-0.9
2,941,510	-		Sama_2444	0.28	+0.3
2,941,510	-		Sama_2444	0.28	+1.2
2,941,510	-		Sama_2444	0.28	+2.4
2,941,510	-		Sama_2444	0.28	+0.7
2,941,510	-		Sama_2444	0.28	+0.7
2,941,543	-		Sama_2444	0.31	+1.8
2,941,550	+		Sama_2444	0.32	-2.2
2,941,551	-		Sama_2444	0.32	+1.6
2,941,586	+		Sama_2444	0.35	-1.5
2,941,586	+		Sama_2444	0.35	-1.2
2,941,587	-		Sama_2444	0.35	-0.6
2,941,587	-		Sama_2444	0.35	-2.7
2,941,587	-		Sama_2444	0.35	-0.5
2,941,598	+		Sama_2444	0.36	-0.1
2,941,598	+		Sama_2444	0.36	-0.0
2,941,611	+		Sama_2444	0.37	-0.5
2,941,611	+		Sama_2444	0.37	-3.2
2,941,611	+		Sama_2444	0.37	-1.2
2,941,612	-		Sama_2444	0.38	+1.8
2,941,613	+		Sama_2444	0.38	+2.3
2,941,613	+		Sama_2444	0.38	+1.4
2,941,613	+		Sama_2444	0.38	+0.9
2,941,613	+		Sama_2444	0.38	-1.2
2,941,613	+		Sama_2444	0.38	+0.6
2,941,613	+		Sama_2444	0.38	+0.9
2,941,614	-		Sama_2444	0.38	+1.1
2,941,614	-		Sama_2444	0.38	+1.9
2,941,614	-		Sama_2444	0.38	-1.3
2,941,614	-		Sama_2444	0.38	-1.1
2,941,614	-		Sama_2444	0.38	+1.5
2,941,614	-		Sama_2444	0.38	+0.8
2,941,614	-		Sama_2444	0.38	+1.4
2,941,614	-		Sama_2444	0.38	-0.2
2,941,614	-		Sama_2444	0.38	-1.1
2,941,621	+		Sama_2444	0.38	+0.6
2,941,622	-		Sama_2444	0.38	+1.1
2,941,622	-		Sama_2444	0.38	-3.5
2,941,634	+		Sama_2444	0.40	-2.3
2,941,634	+		Sama_2444	0.40	-1.2
2,941,635	-		Sama_2444	0.40	-1.2
2,941,635	-		Sama_2444	0.40	+0.0
2,941,635	-		Sama_2444	0.40	-0.8
2,941,635	-		Sama_2444	0.40	+1.8
2,941,636	+		Sama_2444	0.40	-0.3
2,941,637	-		Sama_2444	0.40	+2.8
2,941,637	-		Sama_2444	0.40	+1.8
2,941,637	-		Sama_2444	0.40	+0.6
2,941,637	-		Sama_2444	0.40	-0.9
2,941,637	-		Sama_2444	0.40	+1.5
2,941,637	-		Sama_2444	0.40	+1.7
2,941,637	-		Sama_2444	0.40	+1.0
2,941,637	-		Sama_2444	0.40	+0.0
2,941,655	+		Sama_2444	0.42	-1.3
2,941,655	+		Sama_2444	0.42	+2.9
2,941,659	+		Sama_2444	0.42	+2.0
2,941,660	-		Sama_2444	0.42	+0.6
2,941,671	+		Sama_2444	0.43	+0.3
2,941,671	+		Sama_2444	0.43	-1.2
2,941,672	-		Sama_2444	0.43	-0.5
2,941,672	-		Sama_2444	0.43	-3.4
2,941,691	+		Sama_2444	0.45	+2.0
2,941,691	+		Sama_2444	0.45	-1.7
2,941,691	+		Sama_2444	0.45	-1.2
2,941,691	+		Sama_2444	0.45	-1.2
2,941,692	-		Sama_2444	0.45	-1.5
2,941,692	-		Sama_2444	0.45	-0.7
2,941,716	+		Sama_2444	0.47	-0.5
2,941,717	-		Sama_2444	0.47	-1.2
2,941,717	-		Sama_2444	0.47	+0.8
2,941,742	+		Sama_2444	0.50	-1.7
2,941,742	+		Sama_2444	0.50	-2.1
2,941,743	-		Sama_2444	0.50	+1.1
2,941,761	+		Sama_2444	0.51	-1.5
2,941,763	+		Sama_2444	0.51	-2.5
2,941,763	+		Sama_2444	0.51	-1.3
2,941,763	+		Sama_2444	0.51	+2.6
2,941,763	+		Sama_2444	0.51	-0.9
2,941,763	+		Sama_2444	0.51	+0.1
2,941,764	-		Sama_2444	0.52	+0.1
2,941,764	-		Sama_2444	0.52	+0.1
2,941,764	-		Sama_2444	0.52	-2.1
2,941,764	-		Sama_2444	0.52	+1.1
2,941,769	+		Sama_2444	0.52	-1.0
2,941,769	+		Sama_2444	0.52	-0.4
2,941,770	-		Sama_2444	0.52	+1.2
2,941,770	-		Sama_2444	0.52	-1.5
2,941,784	+		Sama_2444	0.53	-1.5
2,941,784	+		Sama_2444	0.53	-0.2
2,941,784	+		Sama_2444	0.53	-2.3
2,941,785	-		Sama_2444	0.53	-2.5
2,941,785	-		Sama_2444	0.53	-0.3
2,941,785	-		Sama_2444	0.53	-0.5
2,941,785	-		Sama_2444	0.53	+0.1
2,941,785	-		Sama_2444	0.53	-2.7
2,941,785	-		Sama_2444	0.53	+1.1
2,941,787	+		Sama_2444	0.54	+1.7
2,941,787	+		Sama_2444	0.54	+0.3
2,941,787	+		Sama_2444	0.54	-1.7
2,941,788	-		Sama_2444	0.54	-0.3
2,941,788	-		Sama_2444	0.54	+2.0
2,941,788	-		Sama_2444	0.54	-0.2
2,941,821	+		Sama_2444	0.57	-1.1
2,941,821	+		Sama_2444	0.57	+1.9
2,941,822	-		Sama_2444	0.57	-1.2
2,941,822	-		Sama_2444	0.57	-0.4
2,941,827	+		Sama_2444	0.57	-1.2
2,941,829	+		Sama_2444	0.58	-2.5
2,941,829	+		Sama_2444	0.58	+0.5
2,941,830	-		Sama_2444	0.58	+0.4
2,941,830	-		Sama_2444	0.58	+1.3
2,941,883	+		Sama_2444	0.63	-1.2
2,941,903	-		Sama_2444	0.64	-1.7
2,941,979	+		Sama_2444	0.71	+1.6
2,941,980	-		Sama_2444	0.71	-1.5
2,941,980	-		Sama_2444	0.71	+3.1
2,941,980	-		Sama_2444	0.71	-0.2
2,941,980	-		Sama_2444	0.71	-1.7
2,941,980	-		Sama_2444	0.71	+1.3
2,942,080	+		Sama_2444	0.81	+1.7
2,942,081	-		Sama_2444	0.81	-1.7
2,942,091	-		Sama_2444	0.82	+1.8
2,942,132	+		Sama_2444	0.85	+1.6
2,942,133	-		Sama_2444	0.86	-2.3
2,942,133	-		Sama_2444	0.86	+1.1
2,942,192	+				+2.4
2,942,239	+				-2.9
2,942,239	+				-0.1
2,942,239	+				-2.3
2,942,240	-				-0.7
2,942,245	-				-0.1
2,942,294	-				-2.1
2,942,296	-				+2.1
2,942,306	+				+1.5
2,942,307	-				-1.2
2,942,307	-				+0.7
2,942,329	-				-2.1
2,942,329	-				-1.0
2,942,338	+				-1.7
2,942,338	+				-1.2
2,942,339	-				-0.3
2,942,339	-				-0.9
2,942,339	-				-2.9
2,942,374	+				+0.6
2,942,375	-				+0.7
2,942,381	+				-0.6
2,942,382	-				-0.3
2,942,426	-				-1.7
2,942,426	-				-1.7
2,942,426	-				-0.0
2,942,426	-				+0.4
2,942,426	-				+0.7
2,942,442	-				-0.5
2,942,442	-				-3.0
2,942,442	-				+0.8
2,942,442	-				+0.8
2,942,509	+				+0.7
2,942,509	+				+0.4
2,942,510	-				-1.5
2,942,510	-				+0.1
2,942,510	-				+0.5
2,942,510	-				-1.7
2,942,510	-				-1.9
2,942,510	-				-2.2
2,942,510	-				-3.2
2,942,510	-				-0.7
2,942,510	-				-0.8
2,942,511	+				+1.0
2,942,511	+				-0.1
2,942,511	+				-0.0
2,942,512	-				-3.0
2,942,512	-				+0.9
2,942,512	-				+0.1
2,942,512	-				-2.3
2,942,622	+		Sama_2445	0.17	+0.6
2,942,667	+		Sama_2445	0.21	+2.0
2,942,668	-		Sama_2445	0.21	-1.2
2,942,695	+		Sama_2445	0.23	+1.1
2,942,723	+		Sama_2445	0.25	+1.9
2,942,724	-		Sama_2445	0.25	+1.8
2,942,724	-		Sama_2445	0.25	+1.0
2,942,775	-		Sama_2445	0.29	+0.1
2,942,816	+		Sama_2445	0.32	-0.5
2,942,847	+		Sama_2445	0.34	-0.5
2,942,848	-		Sama_2445	0.34	+1.3
2,942,848	-		Sama_2445	0.34	+0.8
2,942,867	-		Sama_2445	0.36	+0.0
2,942,884	+		Sama_2445	0.37	+1.7
2,942,971	+		Sama_2445	0.44	-2.0
2,942,971	+		Sama_2445	0.44	-0.8
2,942,971	+		Sama_2445	0.44	+0.4
2,942,972	-		Sama_2445	0.44	+0.3
2,943,012	-		Sama_2445	0.47	-0.5
2,943,178	+		Sama_2445	0.59	-0.9
2,943,192	-		Sama_2445	0.60	+0.8
2,943,194	+		Sama_2445	0.60	+1.1
2,943,194	+		Sama_2445	0.60	+0.4
2,943,194	+		Sama_2445	0.60	+1.6
2,943,275	-		Sama_2445	0.66	-2.1
2,943,305	-		Sama_2445	0.69	+1.6
2,943,316	+		Sama_2445	0.69	+2.3
2,943,317	-		Sama_2445	0.70	-1.9
2,943,317	-		Sama_2445	0.70	+1.9
2,943,317	-		Sama_2445	0.70	-0.5
2,943,363	-		Sama_2445	0.73	+2.6
2,943,363	-		Sama_2445	0.73	+0.8
2,943,363	-		Sama_2445	0.73	-2.3
2,943,363	-		Sama_2445	0.73	+1.4
2,943,363	-		Sama_2445	0.73	+0.0
2,943,368	+		Sama_2445	0.73	-0.3
2,943,399	-		Sama_2445	0.76	+0.1
2,943,489	+		Sama_2445	0.82	-1.6
2,943,490	-		Sama_2445	0.83	-0.6
2,943,532	+		Sama_2445	0.86	-0.9
2,943,532	+		Sama_2445	0.86	+0.8
2,943,533	-		Sama_2445	0.86	-1.7
2,943,533	-		Sama_2445	0.86	-0.1
2,943,533	-		Sama_2445	0.86	+4.5
2,943,563	+		Sama_2445	0.88	+0.1
2,943,564	-		Sama_2445	0.88	+0.0
2,943,564	-		Sama_2445	0.88	-2.1
2,943,625	+				+1.9
2,943,625	+				-0.5
2,943,625	+				+0.1
2,943,626	-				+1.9
2,943,626	-				+0.1
2,943,626	-				-1.7
2,943,626	-				-0.5
2,943,651	+				+0.4
2,943,652	-				+0.4
2,943,667	+				-1.9
2,943,667	+				-1.9
2,943,838	-				+0.9
2,943,838	-				+0.9
2,943,878	+				-0.5
2,943,879	-				+0.8
2,943,880	+				+0.2
2,943,880	+				-2.3
2,943,880	+				-0.6
2,943,881	-				-2.2
2,943,881	-				+1.1
2,943,900	-				-2.3
2,943,914	+				+1.3
2,943,940	+				-0.5
2,943,940	+				+1.3
2,943,941	-				+0.5
2,943,941	-				+1.6
2,944,212	-		Sama_2446	0.26	+1.7
2,944,254	+		Sama_2446	0.30	+0.3
2,944,255	-		Sama_2446	0.30	+1.7
2,944,415	+		Sama_2446	0.46	-1.2
2,944,462	+		Sama_2446	0.50	-1.9
2,944,462	+		Sama_2446	0.50	+1.5
2,944,463	-		Sama_2446	0.50	-0.5
2,944,463	-		Sama_2446	0.50	+1.1
2,944,500	-		Sama_2446	0.54	-1.7
2,944,567	+		Sama_2446	0.60	+0.9
2,944,568	-		Sama_2446	0.60	-0.2
2,944,568	-		Sama_2446	0.60	-2.5
2,944,636	+		Sama_2446	0.67	-2.5
2,944,665	-		Sama_2446	0.70	+0.1
2,944,665	-		Sama_2446	0.70	+0.3
2,944,665	-		Sama_2446	0.70	+0.7