Strain Fitness in Shewanella amazonensis SB2B around Sama_2382

Experiment: outer cut, LB soft agar motility assay

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	outer cut, LB soft agar motility assay
2,861,882	-				+1.2
2,862,122	+				+0.6
2,862,122	+				+3.7
2,862,123	-				+0.2
2,862,162	-				-0.1
2,862,165	+				+1.7
2,862,165	+				-0.6
2,862,165	+				-1.4
2,862,165	+				-0.8
2,862,165	+				-2.4
2,862,165	+				+0.8
2,862,165	+				-3.7
2,862,166	-				+0.2
2,862,166	-				-2.0
2,862,166	-				-0.4
2,862,166	-				-1.6
2,862,166	-				-0.6
2,862,190	+				-1.0
2,862,190	+				-0.5
2,862,191	-				-2.1
2,862,191	-				+0.6
2,862,197	+				+1.2
2,862,324	+				+1.2
2,862,324	+				-1.3
2,862,325	-				-1.7
2,862,342	+				+1.8
2,862,403	+				-2.1
2,862,458	+				+0.2
2,862,458	+				+0.0
2,862,458	+				+1.1
2,862,458	+				-0.2
2,862,458	+				+0.8
2,862,458	+				+2.0
2,862,459	-				-0.8
2,862,459	-				-1.6
2,862,459	-				-0.7
2,862,459	-				-1.4
2,862,504	+				-1.3
2,862,504	+				+1.2
2,862,504	+				-0.1
2,862,504	+				+0.2
2,862,504	+				-0.8
2,862,504	+				-2.4
2,862,504	+				+2.1
2,862,504	+				+0.8
2,862,505	-				-1.6
2,862,579	+				-0.8
2,862,579	+				-0.4
2,862,609	+				-0.8
2,862,609	+				-1.4
2,862,609	+				+2.6
2,862,609	+				+0.2
2,862,610	-				+1.0
2,862,610	-				+0.4
2,862,610	-				-1.0
2,862,610	-				+1.3
2,862,640	-				+1.2
2,862,672	+				-2.0
2,862,673	-				-1.8
2,862,673	-				+1.2
2,862,673	-				-0.8
2,862,673	-				+0.2
2,862,697	+				-1.4
2,862,711	-				-0.1
2,862,721	+				-0.0
2,862,721	+				-0.7
2,862,722	-				-1.6
2,862,722	-				-0.4
2,862,736	-				-0.7
2,862,743	-				-1.1
2,862,768	+				+1.9
2,862,768	+				+1.4
2,862,768	+				-2.1
2,862,769	-				-0.3
2,862,769	-				-1.8
2,862,769	-				-0.8
2,862,769	-				-0.2
2,862,769	-				+0.4
2,862,769	-				+1.2
2,862,772	+				+0.7
2,862,772	+				-0.5
2,862,772	+				+1.5
2,862,772	+				-1.4
2,862,772	+				-2.3
2,862,772	+				-0.2
2,862,773	-				+1.9
2,862,773	-				-2.1
2,862,795	+				-0.8
2,862,812	-				-0.7
2,862,812	-				-0.5
2,862,998	-		Sama_2382	0.10	+2.5
2,862,998	-		Sama_2382	0.10	-0.2
2,863,066	-		Sama_2382	0.14	-1.1
2,863,068	-		Sama_2382	0.14	-0.8
2,863,068	-		Sama_2382	0.14	-0.4
2,863,068	-		Sama_2382	0.14	-0.8
2,863,106	+		Sama_2382	0.16	+0.8
2,863,107	-		Sama_2382	0.16	-0.9
2,863,153	+		Sama_2382	0.18	+0.9
2,863,153	+		Sama_2382	0.18	+4.2
2,863,178	-		Sama_2382	0.20	-0.8
2,863,258	+		Sama_2382	0.24	-0.5
2,863,258	+		Sama_2382	0.24	-2.3
2,863,259	-		Sama_2382	0.24	-1.6
2,863,259	-		Sama_2382	0.24	+1.4
2,863,259	-		Sama_2382	0.24	-0.8
2,863,259	-		Sama_2382	0.24	+0.2
2,863,288	+		Sama_2382	0.25	+0.8
2,863,288	+		Sama_2382	0.25	+1.2
2,863,288	+		Sama_2382	0.25	-0.1
2,863,289	-		Sama_2382	0.25	+2.4
2,863,289	-		Sama_2382	0.25	+2.0
2,863,351	+		Sama_2382	0.29	+0.6
2,863,433	-		Sama_2382	0.33	-1.8
2,863,482	+		Sama_2382	0.35	-1.1
2,863,482	+		Sama_2382	0.35	+1.7
2,863,483	-		Sama_2382	0.35	-0.4
2,863,483	-		Sama_2382	0.35	-3.1
2,863,483	-		Sama_2382	0.35	+0.2
2,863,521	+		Sama_2382	0.37	-1.0
2,863,521	+		Sama_2382	0.37	-0.0
2,863,522	-		Sama_2382	0.37	-0.0
2,863,522	-		Sama_2382	0.37	+2.0
2,863,522	-		Sama_2382	0.37	+1.9
2,863,522	-		Sama_2382	0.37	+0.6
2,863,522	-		Sama_2382	0.37	+0.9
2,863,528	+		Sama_2382	0.38	-2.5
2,863,528	+		Sama_2382	0.38	-1.0
2,863,529	-		Sama_2382	0.38	+1.2
2,863,563	-		Sama_2382	0.39	-0.1
2,863,563	-		Sama_2382	0.39	+2.2
2,863,569	-		Sama_2382	0.40	-0.4
2,863,573	+		Sama_2382	0.40	-0.4
2,863,573	+		Sama_2382	0.40	-2.0
2,863,573	+		Sama_2382	0.40	+0.6
2,863,574	-		Sama_2382	0.40	-2.0
2,863,574	-		Sama_2382	0.40	-0.4
2,863,627	+		Sama_2382	0.43	+0.3
2,863,627	+		Sama_2382	0.43	-2.0
2,863,628	-		Sama_2382	0.43	+1.0
2,863,628	-		Sama_2382	0.43	-1.1
2,863,628	-		Sama_2382	0.43	+0.7
2,863,628	-		Sama_2382	0.43	-1.7
2,863,647	+		Sama_2382	0.44	-3.2
2,863,647	+		Sama_2382	0.44	-0.8
2,863,647	+		Sama_2382	0.44	-1.1
2,863,647	+		Sama_2382	0.44	-2.5
2,863,648	-		Sama_2382	0.44	-1.3
2,863,791	+		Sama_2382	0.51	+1.8
2,863,791	+		Sama_2382	0.51	+0.1
2,863,792	-		Sama_2382	0.51	-3.1
2,863,792	-		Sama_2382	0.51	-0.0
2,863,792	-		Sama_2382	0.51	-0.9
2,863,811	-		Sama_2382	0.52	+0.3
2,863,839	+		Sama_2382	0.54	+1.6
2,863,839	+		Sama_2382	0.54	+1.0
2,863,839	+		Sama_2382	0.54	-0.3
2,863,840	-		Sama_2382	0.54	-0.0
2,863,840	-		Sama_2382	0.54	-0.8
2,863,840	-		Sama_2382	0.54	-0.4
2,863,840	-		Sama_2382	0.54	+0.7
2,863,861	+		Sama_2382	0.55	-2.1
2,863,862	-		Sama_2382	0.55	-0.9
2,863,886	-		Sama_2382	0.56	-0.5
2,863,886	-		Sama_2382	0.56	+1.2
2,863,936	-		Sama_2382	0.59	-0.8
2,864,059	+		Sama_2382	0.65	+1.0
2,864,059	+		Sama_2382	0.65	-0.7
2,864,059	+		Sama_2382	0.65	+2.5
2,864,059	+		Sama_2382	0.65	+0.2
2,864,059	+		Sama_2382	0.65	-0.8
2,864,059	+		Sama_2382	0.65	-0.4
2,864,059	+		Sama_2382	0.65	-1.1
2,864,059	+		Sama_2382	0.65	-1.8
2,864,059	+		Sama_2382	0.65	+2.2
2,864,059	+		Sama_2382	0.65	+3.5
2,864,060	-		Sama_2382	0.65	-1.4
2,864,060	-		Sama_2382	0.65	-0.4
2,864,060	-		Sama_2382	0.65	+0.8
2,864,074	+		Sama_2382	0.66	+0.2
2,864,074	+		Sama_2382	0.66	-1.3
2,864,074	+		Sama_2382	0.66	+1.9
2,864,075	-		Sama_2382	0.66	-0.1
2,864,075	-		Sama_2382	0.66	+0.2
2,864,118	+		Sama_2382	0.68	+1.5
2,864,176	+		Sama_2382	0.71	-1.4
2,864,176	+		Sama_2382	0.71	+0.9
2,864,176	+		Sama_2382	0.71	+1.5
2,864,176	+		Sama_2382	0.71	+0.2
2,864,176	+		Sama_2382	0.71	+1.2
2,864,177	-		Sama_2382	0.71	-0.0
2,864,177	-		Sama_2382	0.71	-0.4
2,864,178	+		Sama_2382	0.71	+1.2
2,864,178	+		Sama_2382	0.71	-2.0
2,864,178	+		Sama_2382	0.71	-1.6
2,864,178	+		Sama_2382	0.71	+0.8
2,864,178	+		Sama_2382	0.71	+2.3
2,864,179	-		Sama_2382	0.71	+1.4
2,864,188	+		Sama_2382	0.71	-2.3
2,864,189	-		Sama_2382	0.72	-1.1
2,864,190	+		Sama_2382	0.72	+1.2
2,864,190	+		Sama_2382	0.72	+1.2
2,864,190	+		Sama_2382	0.72	+1.0
2,864,191	-		Sama_2382	0.72	-0.1
2,864,191	-		Sama_2382	0.72	+0.9
2,864,191	-		Sama_2382	0.72	+0.0
2,864,191	-		Sama_2382	0.72	+0.8
2,864,203	-		Sama_2382	0.72	+2.3
2,864,209	+		Sama_2382	0.73	+3.0
2,864,218	+		Sama_2382	0.73	+2.4
2,864,219	-		Sama_2382	0.73	-1.1
2,864,219	-		Sama_2382	0.73	-1.4
2,864,219	-		Sama_2382	0.73	-0.5
2,864,235	-		Sama_2382	0.74	-1.8
2,864,256	+		Sama_2382	0.75	-3.7
2,864,274	+		Sama_2382	0.76	+0.1
2,864,274	+		Sama_2382	0.76	+0.4
2,864,275	-		Sama_2382	0.76	-2.9
2,864,289	+		Sama_2382	0.77	-0.4
2,864,289	+		Sama_2382	0.77	-1.9
2,864,313	+		Sama_2382	0.78	-0.8
2,864,314	-		Sama_2382	0.78	-0.4
2,864,314	-		Sama_2382	0.78	+2.0
2,864,314	-		Sama_2382	0.78	-0.6
2,864,327	+		Sama_2382	0.79	-2.5
2,864,327	+		Sama_2382	0.79	-1.1
2,864,328	-		Sama_2382	0.79	-2.5
2,864,328	-		Sama_2382	0.79	+1.2
2,864,328	-		Sama_2382	0.79	-1.4
2,864,328	-		Sama_2382	0.79	+2.0
2,864,376	+		Sama_2382	0.81	-1.1
2,864,377	-		Sama_2382	0.81	-1.8
2,864,412	+		Sama_2382	0.83	-1.7
2,864,413	-		Sama_2382	0.83	-0.8
2,864,427	+		Sama_2382	0.84	+1.2
2,864,427	+		Sama_2382	0.84	+0.7
2,864,428	-		Sama_2382	0.84	-0.4
2,864,505	+		Sama_2382	0.88	-1.0
2,864,518	-		Sama_2382	0.88	-0.0
2,864,518	-		Sama_2382	0.88	-1.6
2,864,519	+		Sama_2382	0.88	-2.1
2,864,519	+		Sama_2382	0.88	+0.6
2,864,519	+		Sama_2382	0.88	+1.1
2,864,519	+		Sama_2382	0.88	-1.0
2,864,519	+		Sama_2382	0.88	+0.3
2,864,519	+		Sama_2382	0.88	-2.3
2,864,519	+		Sama_2382	0.88	+0.9
2,864,520	-		Sama_2382	0.89	-0.6
2,864,520	-		Sama_2382	0.89	+2.0
2,864,520	-		Sama_2382	0.89	+1.3
2,864,520	-		Sama_2382	0.89	+0.4
2,864,520	-		Sama_2382	0.89	-0.5
2,864,520	-		Sama_2382	0.89	-0.3
2,864,520	-		Sama_2382	0.89	-0.2
2,864,592	-				+1.9
2,864,592	-				-0.7
2,864,596	+				+3.0
2,864,597	-				-2.6
2,864,597	-				-0.0
2,864,600	-				+1.2
2,864,642	+				-2.4
2,864,643	-				+0.5
2,864,643	-				-2.3
2,864,643	-				+2.6
2,864,645	-				+0.2
2,864,645	-				+2.2
2,864,645	-				+1.5
2,864,645	-				+0.7
2,864,645	-				-0.8
2,864,667	+				+0.9
2,864,745	+				+0.6
2,864,746	-				+1.4
2,864,746	-				-0.8
2,864,764	-				-2.5
2,864,764	-				-0.1
2,864,784	+		Sama_2383	0.19	-0.6
2,864,784	+		Sama_2383	0.19	+2.6
2,864,821	+		Sama_2383	0.36	+0.2
2,864,822	-		Sama_2383	0.36	-0.1
2,864,876	+		Sama_2383	0.61	+0.9
2,864,876	+		Sama_2383	0.61	-0.0
2,864,876	+		Sama_2383	0.61	-0.8
2,864,877	-		Sama_2383	0.62	+0.9
2,864,877	-		Sama_2383	0.62	+0.6
2,864,896	+		Sama_2383	0.70	+0.5
2,864,897	-		Sama_2383	0.71	+0.2
2,864,897	-		Sama_2383	0.71	-0.1
2,864,898	+		Sama_2383	0.71	+2.7
2,864,898	+		Sama_2383	0.71	+3.1
2,864,971	+				+2.2
2,864,972	-				-2.1
2,865,007	+				-2.3
2,865,007	+				+3.5
2,865,007	+				+0.8
2,865,007	+				-1.6
2,865,007	+				+1.2
2,865,007	+				+3.0
2,865,007	+				-0.1
2,865,007	+				+0.8
2,865,008	-				-1.3
2,865,008	-				+0.9
2,865,053	+				+0.6
2,865,054	-				-0.0
2,865,054	-				-1.6
2,865,066	+				+2.1
2,865,066	+				-2.3
2,865,067	-				-2.4
2,865,067	-				-1.2
2,865,129	-		Sama_2384	0.15	-1.6
2,865,189	+		Sama_2384	0.22	-1.4
2,865,189	+		Sama_2384	0.22	-2.8
2,865,190	-		Sama_2384	0.22	+0.3
2,865,190	-		Sama_2384	0.22	-0.5
2,865,227	+		Sama_2384	0.27	-0.6
2,865,227	+		Sama_2384	0.27	-1.8
2,865,227	+		Sama_2384	0.27	+0.9
2,865,227	+		Sama_2384	0.27	-0.6
2,865,227	+		Sama_2384	0.27	-0.4
2,865,227	+		Sama_2384	0.27	-2.1
2,865,228	-		Sama_2384	0.27	-2.4
2,865,228	-		Sama_2384	0.27	+2.7
2,865,228	-		Sama_2384	0.27	+1.6
2,865,228	-		Sama_2384	0.27	-1.5
2,865,302	+		Sama_2384	0.36	+0.6
2,865,303	-		Sama_2384	0.36	-1.1
2,865,303	-		Sama_2384	0.36	-0.8
2,865,303	-		Sama_2384	0.36	-0.8
2,865,317	+		Sama_2384	0.38	-0.6
2,865,317	+		Sama_2384	0.38	-0.7
2,865,317	+		Sama_2384	0.38	-0.4
2,865,317	+		Sama_2384	0.38	+0.8
2,865,318	-		Sama_2384	0.38	-1.1
2,865,318	-		Sama_2384	0.38	-1.1
2,865,318	-		Sama_2384	0.38	-1.8
2,865,318	-		Sama_2384	0.38	-0.2
2,865,318	-		Sama_2384	0.38	-3.1
2,865,318	-		Sama_2384	0.38	-1.2
2,865,334	+		Sama_2384	0.40	+1.0
2,865,348	+		Sama_2384	0.42	-0.1
2,865,374	-		Sama_2384	0.45	-0.4
2,865,374	-		Sama_2384	0.45	+1.6
2,865,485	+		Sama_2384	0.59	-2.3
2,865,486	-		Sama_2384	0.60	-0.8
2,865,486	-		Sama_2384	0.60	-0.3
2,865,493	+		Sama_2384	0.60	+0.2
2,865,493	+		Sama_2384	0.60	-2.4
2,865,493	+		Sama_2384	0.60	+2.0
2,865,494	-		Sama_2384	0.61	+0.8
2,865,494	-		Sama_2384	0.61	-0.8
2,865,494	-		Sama_2384	0.61	+0.8
2,865,494	-		Sama_2384	0.61	+0.6
2,865,494	-		Sama_2384	0.61	+0.2
2,865,494	-		Sama_2384	0.61	-0.8
2,865,494	-		Sama_2384	0.61	+1.8
2,865,494	-		Sama_2384	0.61	-2.2
2,865,494	-		Sama_2384	0.61	-0.8
2,865,494	-		Sama_2384	0.61	+0.7
2,865,494	-		Sama_2384	0.61	-0.4
2,865,528	+		Sama_2384	0.65	-2.1
2,865,529	-		Sama_2384	0.65	+0.6
2,865,529	-		Sama_2384	0.65	+0.5
2,865,529	-		Sama_2384	0.65	-1.0
2,865,594	+		Sama_2384	0.73	-2.1
2,865,595	-		Sama_2384	0.73	-4.1
2,865,614	+		Sama_2384	0.76	-0.4
2,865,615	-		Sama_2384	0.76	+1.2
2,865,615	-		Sama_2384	0.76	-1.4
2,865,615	-		Sama_2384	0.76	+0.2
2,865,615	-		Sama_2384	0.76	-0.3
2,865,615	-		Sama_2384	0.76	-1.6
2,865,633	+		Sama_2384	0.78	-0.3
2,865,633	+		Sama_2384	0.78	-0.8
2,865,665	-		Sama_2384	0.82	+0.3
2,865,679	-		Sama_2384	0.84	-0.4
2,865,679	-		Sama_2384	0.84	+0.1
2,865,679	-		Sama_2384	0.84	-0.8
2,865,714	-		Sama_2384	0.88	+0.5