Strain Fitness in Shewanella amazonensis SB2B around Sama_1191

Experiment: outer cut, LB soft agar motility assay

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	outer cut, LB soft agar motility assay
1,457,867	+		Sama_1189	0.80	-1.9
1,457,867	+		Sama_1189	0.80	+0.6
1,457,867	+		Sama_1189	0.80	-0.6
1,457,867	+		Sama_1189	0.80	+0.2
1,457,867	+		Sama_1189	0.80	+1.0
1,457,867	+		Sama_1189	0.80	-0.0
1,457,867	+		Sama_1189	0.80	-1.8
1,457,867	+		Sama_1189	0.80	+0.6
1,457,868	-		Sama_1189	0.80	+2.4
1,457,868	-		Sama_1189	0.80	+2.1
1,457,868	-		Sama_1189	0.80	-0.4
1,457,903	+		Sama_1189	0.82	+1.5
1,457,907	+		Sama_1189	0.83	-2.2
1,457,907	+		Sama_1189	0.83	-0.8
1,457,907	+		Sama_1189	0.83	-1.3
1,457,907	+		Sama_1189	0.83	-2.0
1,457,907	+		Sama_1189	0.83	+0.6
1,457,908	-		Sama_1189	0.83	+0.3
1,457,908	-		Sama_1189	0.83	-1.0
1,457,956	+		Sama_1189	0.85	-0.8
1,458,002	+		Sama_1189	0.88	+2.1
1,458,002	+		Sama_1189	0.88	+0.9
1,458,003	-		Sama_1189	0.88	-1.8
1,458,003	-		Sama_1189	0.88	+0.6
1,458,057	+				+2.2
1,458,058	-				-1.8
1,458,059	+				-1.6
1,458,059	+				-1.6
1,458,059	+				+1.2
1,458,059	+				-2.3
1,458,059	+				-0.2
1,458,060	-				-1.3
1,458,060	-				-1.3
1,458,060	-				+0.7
1,458,060	-				+0.3
1,458,060	-				+1.6
1,458,060	-				-0.7
1,458,060	-				+0.2
1,458,089	+				-1.8
1,458,089	+				-0.5
1,458,089	+				-2.0
1,458,090	-				-0.3
1,458,097	+				+0.9
1,458,100	+				-3.3
1,458,100	+				-1.0
1,458,100	+				-0.1
1,458,100	+				+1.4
1,458,100	+				-1.0
1,458,100	+				+0.3
1,458,101	-				+1.7
1,458,101	-				-0.6
1,458,101	-				-0.8
1,458,110	+				-1.7
1,458,110	+				+0.6
1,458,111	-				-1.4
1,458,111	-				-0.6
1,458,130	-				+2.2
1,458,136	-				-1.3
1,458,136	-				-1.0
1,458,136	-				-0.4
1,458,312	-				+1.4
1,458,312	-				+0.1
1,458,327	+				-0.4
1,458,328	-				+1.0
1,458,332	-				-3.0
1,458,352	+				+0.4
1,458,353	-				-1.8
1,458,406	+		Sama_1190	0.12	+0.8
1,458,406	+		Sama_1190	0.12	-2.5
1,458,407	-		Sama_1190	0.12	-0.9
1,458,407	-		Sama_1190	0.12	-0.8
1,458,428	+		Sama_1190	0.18	-1.4
1,458,428	+		Sama_1190	0.18	-0.0
1,458,428	+		Sama_1190	0.18	-0.8
1,458,429	-		Sama_1190	0.18	-1.0
1,458,429	-		Sama_1190	0.18	-0.6
1,458,429	-		Sama_1190	0.18	-0.6
1,458,429	-		Sama_1190	0.18	-1.6
1,458,483	-		Sama_1190	0.32	+0.4
1,458,575	+		Sama_1190	0.56	+1.7
1,458,575	+		Sama_1190	0.56	+1.0
1,458,575	+		Sama_1190	0.56	+0.5
1,458,593	-		Sama_1190	0.61	+0.3
1,458,681	-		Sama_1190	0.84	+1.5
1,458,681	-		Sama_1190	0.84	-0.1
1,458,684	+		Sama_1190	0.85	+2.2
1,458,684	+		Sama_1190	0.85	-4.0
1,458,684	+		Sama_1190	0.85	+0.3
1,458,685	-		Sama_1190	0.85	+1.4
1,458,685	-		Sama_1190	0.85	-2.6
1,458,685	-		Sama_1190	0.85	+1.4
1,458,685	-		Sama_1190	0.85	-1.6
1,458,753	+				+0.2
1,458,755	+				-0.6
1,458,755	+				-1.0
1,458,755	+				-1.6
1,458,767	+				+0.7
1,458,768	-				-1.0
1,458,799	+				-0.6
1,458,831	+				-1.0
1,458,831	+				+0.5
1,458,831	+				-1.8
1,458,832	-				+0.6
1,458,844	+				-1.1
1,458,845	-				-1.3
1,458,845	-				-0.6
1,458,885	+				+0.4
1,458,885	+				-1.0
1,458,953	+		Sama_1191	0.15	+0.1
1,458,954	-		Sama_1191	0.15	+1.3
1,459,016	+		Sama_1191	0.24	-0.8
1,459,017	-		Sama_1191	0.24	+2.1
1,459,151	-		Sama_1191	0.43	-0.6
1,459,184	-		Sama_1191	0.48	+2.7
1,459,353	-		Sama_1191	0.72	+1.8
1,459,353	-		Sama_1191	0.72	+1.2
1,459,429	+		Sama_1191	0.82	-1.7
1,459,430	-		Sama_1191	0.83	-0.7
1,459,468	+		Sama_1191	0.88	+1.2
1,459,560	-				+1.6
1,459,590	-				-1.5
1,459,654	+				-2.0
1,459,654	+				-1.0
1,459,655	-				+2.6
1,459,655	-				+1.2
1,459,655	-				+0.8
1,459,655	-				-0.2
1,459,655	-				-0.0
1,459,655	-				+1.1
1,459,681	+				+0.0
1,459,681	+				+0.2
1,459,751	-				-1.9
1,459,755	+				-1.6
1,459,755	+				+1.3
1,459,755	+				+0.4
1,459,755	+				+0.3
1,459,756	-				-0.5
1,459,756	-				-2.7
1,459,756	-				-1.3
1,459,778	-				+0.4
1,459,844	-				+0.8
1,459,844	-				+0.6
1,459,867	+				-1.8
1,459,867	+				-0.3
1,459,868	-				-0.3
1,459,894	+		Sama_1192	0.10	+1.2
1,459,895	-		Sama_1192	0.10	+0.9
1,459,895	-		Sama_1192	0.10	+0.5
1,459,895	-		Sama_1192	0.10	+0.6
1,459,955	-		Sama_1192	0.12	-0.5
1,459,969	+		Sama_1192	0.13	+0.7
1,459,969	+		Sama_1192	0.13	+2.0
1,459,969	+		Sama_1192	0.13	-2.2
1,459,969	+		Sama_1192	0.13	+1.1
1,459,969	+		Sama_1192	0.13	-1.3
1,459,969	+		Sama_1192	0.13	-0.0
1,459,970	-		Sama_1192	0.13	-0.4
1,459,970	-		Sama_1192	0.13	+2.1
1,459,970	-		Sama_1192	0.13	-2.7
1,459,970	-		Sama_1192	0.13	+1.0
1,459,970	-		Sama_1192	0.13	+0.1
1,459,970	-		Sama_1192	0.13	-1.0
1,459,970	-		Sama_1192	0.13	+0.7
1,459,975	+		Sama_1192	0.13	-1.0
1,459,975	+		Sama_1192	0.13	-0.4
1,459,975	+		Sama_1192	0.13	+1.4
1,459,975	+		Sama_1192	0.13	-2.1
1,459,976	-		Sama_1192	0.13	+2.3
1,459,976	-		Sama_1192	0.13	-2.5
1,459,976	-		Sama_1192	0.13	-2.8
1,459,976	-		Sama_1192	0.13	+0.3
1,460,072	-		Sama_1192	0.17	-0.0
1,460,099	+		Sama_1192	0.17	-0.6
1,460,099	+		Sama_1192	0.17	-0.0
1,460,099	+		Sama_1192	0.17	-1.3
1,460,100	-		Sama_1192	0.17	-1.0
1,460,100	-		Sama_1192	0.17	-0.6
1,460,100	-		Sama_1192	0.17	-0.0
1,460,101	+		Sama_1192	0.18	-2.2
1,460,101	+		Sama_1192	0.18	-1.0
1,460,101	+		Sama_1192	0.18	+0.3
1,460,101	+		Sama_1192	0.18	-0.2
1,460,101	+		Sama_1192	0.18	+0.3
1,460,101	+		Sama_1192	0.18	+0.8
1,460,102	-		Sama_1192	0.18	-1.3
1,460,102	-		Sama_1192	0.18	-0.5
1,460,102	-		Sama_1192	0.18	-0.6
1,460,200	+		Sama_1192	0.21	+2.7
1,460,200	+		Sama_1192	0.21	-1.5
1,460,200	+		Sama_1192	0.21	+2.7
1,460,200	+		Sama_1192	0.21	+0.2
1,460,201	-		Sama_1192	0.21	-1.6
1,460,201	-		Sama_1192	0.21	-3.1
1,460,203	+		Sama_1192	0.21	+2.0
1,460,230	+		Sama_1192	0.22	+0.1
1,460,247	+		Sama_1192	0.23	-1.0
1,460,247	+		Sama_1192	0.23	-2.2
1,460,248	-		Sama_1192	0.23	+1.0
1,460,248	-		Sama_1192	0.23	-1.3
1,460,259	-		Sama_1192	0.23	-2.0
1,460,259	-		Sama_1192	0.23	+2.9
1,460,319	-		Sama_1192	0.25	-0.6
1,460,329	+		Sama_1192	0.26	+0.7
1,460,330	-		Sama_1192	0.26	-0.8
1,460,428	+		Sama_1192	0.29	+0.3
1,460,428	+		Sama_1192	0.29	+3.0
1,460,429	-		Sama_1192	0.29	+1.8
1,460,429	-		Sama_1192	0.29	+2.5
1,460,471	+		Sama_1192	0.31	-1.0
1,460,474	+		Sama_1192	0.31	+1.6
1,460,474	+		Sama_1192	0.31	-1.2
1,460,474	+		Sama_1192	0.31	+2.0
1,460,475	-		Sama_1192	0.31	+0.2
1,460,475	-		Sama_1192	0.31	+2.9
1,460,475	-		Sama_1192	0.31	-1.6
1,460,475	-		Sama_1192	0.31	+1.8
1,460,538	+		Sama_1192	0.33	+0.2