Strain Fitness in Shewanella amazonensis SB2B around Sama_1075

Experiment: outer cut, LB soft agar motility assay

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	outer cut, LB soft agar motility assay
1,300,576	+				-1.2
1,300,576	+				+0.3
1,300,576	+				+1.4
1,300,576	+				-0.7
1,300,576	+				-1.6
1,300,576	+				-2.6
1,300,576	+				-1.6
1,300,577	-				-1.0
1,300,577	-				-1.0
1,300,577	-				-1.2
1,300,577	-				-0.3
1,300,577	-				-1.4
1,300,607	-				-1.8
1,300,658	+				+0.6
1,300,666	+				-1.2
1,300,671	-				-0.7
1,300,671	-				+0.2
1,300,674	+				-0.6
1,300,715	+				-1.5
1,300,716	-				+0.7
1,300,753	+				+0.3
1,300,780	-				-2.6
1,300,927	+		Sama_1074	0.20	+1.2
1,301,095	+		Sama_1074	0.44	-0.8
1,301,095	+		Sama_1074	0.44	-1.9
1,301,096	-		Sama_1074	0.44	-1.0
1,301,096	-		Sama_1074	0.44	+0.6
1,301,096	-		Sama_1074	0.44	+0.6
1,301,096	-		Sama_1074	0.44	+1.0
1,301,096	-		Sama_1074	0.44	+1.6
1,301,097	+		Sama_1074	0.44	-0.0
1,301,097	+		Sama_1074	0.44	+1.0
1,301,097	+		Sama_1074	0.44	-1.1
1,301,097	+		Sama_1074	0.44	-1.0
1,301,097	+		Sama_1074	0.44	-2.6
1,301,097	+		Sama_1074	0.44	+1.8
1,301,097	+		Sama_1074	0.44	-1.2
1,301,097	+		Sama_1074	0.44	-1.0
1,301,098	-		Sama_1074	0.44	-2.0
1,301,098	-		Sama_1074	0.44	-1.2
1,301,098	-		Sama_1074	0.44	+0.5
1,301,098	-		Sama_1074	0.44	+2.1
1,301,098	-		Sama_1074	0.44	+2.4
1,301,100	+		Sama_1074	0.45	+0.3
1,301,100	+		Sama_1074	0.45	-2.6
1,301,100	+		Sama_1074	0.45	-2.8
1,301,100	+		Sama_1074	0.45	-1.2
1,301,101	-		Sama_1074	0.45	-0.6
1,301,101	-		Sama_1074	0.45	+1.2
1,301,101	-		Sama_1074	0.45	-2.8
1,301,147	+		Sama_1074	0.51	-0.2
1,301,147	+		Sama_1074	0.51	+0.1
1,301,148	-		Sama_1074	0.52	-2.2
1,301,148	-		Sama_1074	0.52	+1.8
1,301,241	+		Sama_1074	0.65	-1.8
1,301,242	-		Sama_1074	0.65	+1.0
1,301,253	+		Sama_1074	0.67	-2.2
1,301,253	+		Sama_1074	0.67	+3.1
1,301,290	-		Sama_1074	0.72	+0.4
1,301,311	+		Sama_1074	0.75	-4.0
1,301,312	-		Sama_1074	0.75	-2.8
1,301,356	+		Sama_1074	0.82	+1.9
1,301,356	+		Sama_1074	0.82	+0.8
1,301,356	+		Sama_1074	0.82	-0.2
1,301,356	+		Sama_1074	0.82	-1.3
1,301,356	+		Sama_1074	0.82	-1.0
1,301,357	-		Sama_1074	0.82	-1.6
1,301,357	-		Sama_1074	0.82	-1.3
1,301,360	+		Sama_1074	0.82	-1.7
1,301,361	-		Sama_1074	0.82	-2.5
1,301,361	-		Sama_1074	0.82	+0.5
1,301,361	-		Sama_1074	0.82	-1.3
1,301,375	+		Sama_1074	0.84	+1.4
1,301,375	+		Sama_1074	0.84	+0.6
1,301,375	+		Sama_1074	0.84	-1.0
1,301,375	+		Sama_1074	0.84	-0.6
1,301,375	+		Sama_1074	0.84	+2.8
1,301,376	-		Sama_1074	0.85	+0.3
1,301,376	-		Sama_1074	0.85	+0.8
1,301,500	-				+0.8
1,301,508	-				-0.4
1,301,508	-				-2.5
1,301,512	+				+0.2
1,301,512	+				+0.7
1,301,513	-				-1.0
1,301,513	-				+0.9
1,301,513	-				-1.0
1,301,546	+				-0.0
1,301,546	+				-0.2
1,301,546	+				+0.6
1,301,547	-				-0.9
1,301,548	+				+1.0
1,301,548	+				+0.0
1,301,548	+				-0.0
1,301,548	+				+2.0
1,301,548	+				+0.6
1,301,548	+				+0.4
1,301,548	+				+0.9
1,301,548	+				+0.7
1,301,548	+				-1.6
1,301,548	+				-1.8
1,301,548	+				-2.5
1,301,548	+				-2.5
1,301,548	+				-0.4
1,301,548	+				+0.2
1,301,548	+				-0.7
1,301,548	+				+0.5
1,301,549	-				-0.9
1,301,549	-				-0.0
1,301,549	-				+0.8
1,301,549	-				-1.2
1,301,549	-				-1.3
1,301,549	-				-1.3
1,301,549	-				-1.0
1,301,549	-				+1.4
1,301,549	-				-1.5
1,301,549	-				-0.0
1,301,549	-				-1.2
1,301,549	-				-0.6
1,301,549	-				+1.5
1,301,552	+				+0.5
1,301,552	+				+0.3
1,301,552	+				-1.2
1,301,552	+				+2.2
1,301,552	+				-0.2
1,301,552	+				-1.4
1,301,552	+				-3.0
1,301,552	+				+0.4
1,301,552	+				+1.6
1,301,552	+				-1.0
1,301,552	+				-0.7
1,301,552	+				+0.4
1,301,553	-				+0.1
1,301,553	-				+0.7
1,301,553	-				-0.9
1,301,553	-				+0.1
1,301,553	-				+0.7
1,301,553	-				-1.8
1,301,553	-				-0.0
1,301,553	-				+0.8
1,301,553	-				+1.3
1,301,553	-				+0.3
1,301,553	-				-0.3
1,301,553	-				+2.5
1,301,565	+				+0.5
1,301,565	+				-1.6
1,301,565	+				+0.5
1,301,566	-				-0.8
1,301,601	+				+0.1
1,301,601	+				-1.7
1,301,601	+				-0.6
1,301,602	-				+0.5
1,301,602	-				-2.3
1,301,602	-				+1.3
1,301,602	-				-1.2
1,301,675	-				-1.6
1,301,675	-				-0.3
1,301,910	-		Sama_1075	0.27	+1.0
1,301,910	-		Sama_1075	0.27	-1.8
1,301,921	+		Sama_1075	0.28	+0.4
1,301,921	+		Sama_1075	0.28	+0.4
1,301,954	-		Sama_1075	0.31	-2.0
1,302,079	+		Sama_1075	0.40	+0.4
1,302,079	+		Sama_1075	0.40	+1.0
1,302,079	+		Sama_1075	0.40	-1.1
1,302,079	+		Sama_1075	0.40	+1.3
1,302,079	+		Sama_1075	0.40	+0.8
1,302,102	+		Sama_1075	0.42	+0.8
1,302,103	-		Sama_1075	0.42	+0.5
1,302,103	-		Sama_1075	0.42	-2.6
1,302,137	+		Sama_1075	0.45	+1.6
1,302,138	-		Sama_1075	0.45	-0.1
1,302,138	-		Sama_1075	0.45	-0.2
1,302,231	+		Sama_1075	0.52	-1.3
1,302,231	+		Sama_1075	0.52	-0.6
1,302,314	+		Sama_1075	0.58	+0.6
1,302,314	+		Sama_1075	0.58	+0.6
1,302,315	-		Sama_1075	0.58	+0.9
1,302,315	-		Sama_1075	0.58	-0.3
1,302,315	-		Sama_1075	0.58	+1.4
1,302,315	-		Sama_1075	0.58	-1.5
1,302,315	-		Sama_1075	0.58	+0.4
1,302,315	-		Sama_1075	0.58	-0.7
1,302,328	+		Sama_1075	0.59	-1.3
1,302,329	-		Sama_1075	0.59	+1.1
1,302,329	-		Sama_1075	0.59	-0.2
1,302,353	+		Sama_1075	0.61	-1.0
1,302,354	-		Sama_1075	0.61	-0.2
1,302,354	-		Sama_1075	0.61	-2.1
1,302,392	-		Sama_1075	0.64	-2.3
1,302,453	+		Sama_1075	0.69	-1.0
1,302,453	+		Sama_1075	0.69	-2.9
1,302,453	+		Sama_1075	0.69	-0.4
1,302,453	+		Sama_1075	0.69	-2.2
1,302,453	+		Sama_1075	0.69	+2.2
1,302,454	-		Sama_1075	0.69	-2.7
1,302,454	-		Sama_1075	0.69	-0.9
1,302,454	-		Sama_1075	0.69	+2.2
1,302,454	-		Sama_1075	0.69	-1.6
1,302,455	+		Sama_1075	0.69	-1.5
1,302,455	+		Sama_1075	0.69	+1.5
1,302,455	+		Sama_1075	0.69	+0.4
1,302,455	+		Sama_1075	0.69	+1.0
1,302,455	+		Sama_1075	0.69	+3.2
1,302,455	+		Sama_1075	0.69	+1.0
1,302,455	+		Sama_1075	0.69	-0.8
1,302,456	-		Sama_1075	0.69	-1.3
1,302,456	-		Sama_1075	0.69	+2.1
1,302,456	-		Sama_1075	0.69	+0.6
1,302,456	-		Sama_1075	0.69	-3.1
1,302,456	-		Sama_1075	0.69	-0.1
1,302,456	-		Sama_1075	0.69	-1.1
1,302,472	+		Sama_1075	0.70	+0.2
1,302,472	+		Sama_1075	0.70	-0.7
1,302,472	+		Sama_1075	0.70	+2.0
1,302,472	+		Sama_1075	0.70	-0.8
1,302,473	-		Sama_1075	0.70	-1.8
1,302,473	-		Sama_1075	0.70	+2.0
1,302,473	-		Sama_1075	0.70	+0.5
1,302,528	-		Sama_1075	0.75	-1.0
1,302,553	-		Sama_1075	0.77	-0.8
1,302,554	+		Sama_1075	0.77	+0.4
1,302,554	+		Sama_1075	0.77	+1.0
1,302,555	-		Sama_1075	0.77	+0.2
1,302,572	+		Sama_1075	0.78	-0.0
1,302,774	+				+0.4
1,302,774	+				+1.0
1,302,774	+				-2.9
1,302,774	+				-1.6
1,302,774	+				-1.2
1,302,774	+				-1.6
1,302,775	-				+1.3
1,302,775	-				+0.9
1,302,775	-				-0.1
1,302,775	-				-1.0
1,302,775	-				-0.3
1,302,775	-				+0.5
1,302,803	+				+1.3
1,302,804	-				-0.4
1,302,819	-				-2.0
1,302,855	+				+0.0
1,302,855	+				-1.0
1,302,855	+				+2.0
1,302,856	-				-2.6
1,302,874	+				-1.6
1,302,874	+				-0.1
1,302,887	-				-0.0
1,302,887	-				-1.3
1,302,909	-				+1.3
1,302,909	-				-2.5
1,302,955	+				-0.6
1,302,955	+				-1.0
1,302,956	-				-2.2
1,302,956	-				-0.9
1,302,956	-				-1.5
1,302,956	-				-0.8
1,302,975	+				-0.0
1,302,975	+				-0.0
1,302,975	+				+0.4
1,302,976	-				+1.0
1,303,000	-				+2.5
1,303,166	+		Sama_1076	0.13	+5.6
1,303,180	+		Sama_1076	0.14	+5.1
1,303,239	+		Sama_1076	0.20	+4.1
1,303,280	+		Sama_1076	0.24	+6.0
1,303,374	+		Sama_1076	0.34	+4.0
1,303,380	+		Sama_1076	0.35	+6.4
1,303,380	+		Sama_1076	0.35	+3.5
1,303,380	+		Sama_1076	0.35	+5.7
1,303,380	+		Sama_1076	0.35	+6.7
1,303,380	+		Sama_1076	0.35	+5.4
1,303,380	+		Sama_1076	0.35	+4.9
1,303,380	+		Sama_1076	0.35	+5.5
1,303,402	+		Sama_1076	0.37	+6.0
1,303,490	+		Sama_1076	0.46	+1.4
1,303,496	+		Sama_1076	0.47	+3.4
1,303,496	+		Sama_1076	0.47	+1.5
1,303,496	+		Sama_1076	0.47	+3.8
1,303,575	+		Sama_1076	0.55	+4.9
1,303,583	+		Sama_1076	0.55	+4.9
1,303,583	+		Sama_1076	0.55	+0.3
1,303,583	+		Sama_1076	0.55	+4.0
1,303,598	+		Sama_1076	0.57	+5.7
1,303,602	+		Sama_1076	0.57	+6.0
1,303,602	+		Sama_1076	0.57	+4.9
1,303,734	+		Sama_1076	0.71	+8.3
1,303,820	+		Sama_1076	0.80	+3.7
1,303,820	+		Sama_1076	0.80	+2.2
1,303,824	+		Sama_1076	0.80	-1.0
1,303,824	+		Sama_1076	0.80	-0.0
1,303,824	+		Sama_1076	0.80	+2.5
1,303,845	+		Sama_1076	0.82	+4.6
1,303,845	+		Sama_1076	0.82	+3.7
1,303,845	+		Sama_1076	0.82	+5.9
1,303,845	+		Sama_1076	0.82	+4.7
1,303,845	+		Sama_1076	0.82	+3.5
1,303,845	+		Sama_1076	0.82	+1.0
1,303,845	+		Sama_1076	0.82	+4.0
1,303,851	+		Sama_1076	0.83	-0.6
1,303,851	+		Sama_1076	0.83	+6.3
1,303,851	+		Sama_1076	0.83	+3.5
1,303,851	+		Sama_1076	0.83	+5.8