Strain Fitness in Shewanella amazonensis SB2B around Sama_1026

Experiment: outer cut, LB soft agar motility assay

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	outer cut, LB soft agar motility assay
1,240,019	+		Sama_1025	0.56	-1.6
1,240,019	+		Sama_1025	0.56	+0.9
1,240,053	+		Sama_1025	0.58	-1.8
1,240,053	+		Sama_1025	0.58	-3.1
1,240,053	+		Sama_1025	0.58	-2.6
1,240,054	-		Sama_1025	0.58	-2.6
1,240,054	-		Sama_1025	0.58	-2.1
1,240,054	-		Sama_1025	0.58	-0.6
1,240,054	-		Sama_1025	0.58	-0.7
1,240,097	+		Sama_1025	0.60	+0.3
1,240,097	+		Sama_1025	0.60	-1.0
1,240,097	+		Sama_1025	0.60	+1.6
1,240,098	-		Sama_1025	0.61	-2.7
1,240,098	-		Sama_1025	0.61	-0.6
1,240,099	+		Sama_1025	0.61	-1.3
1,240,099	+		Sama_1025	0.61	+0.4
1,240,099	+		Sama_1025	0.61	-0.7
1,240,100	-		Sama_1025	0.61	+2.6
1,240,100	-		Sama_1025	0.61	+0.3
1,240,100	-		Sama_1025	0.61	+2.3
1,240,100	-		Sama_1025	0.61	-0.6
1,240,100	-		Sama_1025	0.61	+0.0
1,240,137	+		Sama_1025	0.63	+2.0
1,240,137	+		Sama_1025	0.63	+0.5
1,240,138	-		Sama_1025	0.63	+2.4
1,240,138	-		Sama_1025	0.63	-1.0
1,240,189	+		Sama_1025	0.66	-3.4
1,240,189	+		Sama_1025	0.66	+0.3
1,240,199	-		Sama_1025	0.66	+0.4
1,240,261	-		Sama_1025	0.69	-0.6
1,240,261	-		Sama_1025	0.69	+1.2
1,240,261	-		Sama_1025	0.69	-1.3
1,240,262	+		Sama_1025	0.70	+2.1
1,240,262	+		Sama_1025	0.70	+0.8
1,240,262	+		Sama_1025	0.70	-1.6
1,240,262	+		Sama_1025	0.70	-1.1
1,240,263	-		Sama_1025	0.70	+0.8
1,240,383	+		Sama_1025	0.76	-1.0
1,240,384	-		Sama_1025	0.76	+2.0
1,240,413	+		Sama_1025	0.78	-1.3
1,240,440	+		Sama_1025	0.79	+3.2
1,240,440	+		Sama_1025	0.79	+0.8
1,240,440	+		Sama_1025	0.79	-2.1
1,240,441	-		Sama_1025	0.79	-1.2
1,240,441	-		Sama_1025	0.79	-1.3
1,240,441	-		Sama_1025	0.79	+0.2
1,240,462	+		Sama_1025	0.81	-1.0
1,240,463	-		Sama_1025	0.81	-2.3
1,240,463	-		Sama_1025	0.81	+3.5
1,240,463	-		Sama_1025	0.81	+0.0
1,240,463	-		Sama_1025	0.81	+0.2
1,240,562	+		Sama_1025	0.86	-2.0
1,240,562	+		Sama_1025	0.86	-1.3
1,240,562	+		Sama_1025	0.86	-1.0
1,240,562	+		Sama_1025	0.86	-0.8
1,240,562	+		Sama_1025	0.86	-1.1
1,240,562	+		Sama_1025	0.86	-1.8
1,240,563	-		Sama_1025	0.86	+2.3
1,240,563	-		Sama_1025	0.86	-2.0
1,240,648	+				-2.0
1,240,649	-				-1.0
1,240,649	-				+1.1
1,240,649	-				+2.0
1,240,709	+				-1.1
1,240,709	+				+1.1
1,240,710	-				+1.2
1,240,710	-				+1.1
1,240,781	+				+2.2
1,240,781	+				+1.4
1,240,781	+				+0.2
1,240,781	+				+2.7
1,240,781	+				-1.7
1,240,781	+				-0.6
1,240,782	-				+3.4
1,240,782	-				-0.6
1,240,807	-				-1.3
1,240,815	+				+0.0
1,240,815	+				-0.4
1,240,815	+				+1.8
1,240,815	+				-1.8
1,240,815	+				+1.5
1,240,815	+				+0.3
1,240,815	+				+0.4
1,240,815	+				-2.0
1,240,816	-				+0.5
1,240,816	-				-0.1
1,240,816	-				+2.1
1,240,816	-				-1.8
1,240,821	-				+0.7
1,240,869	+				-1.3
1,240,869	+				-2.0
1,240,869	+				-1.0
1,240,885	+				+0.3
1,240,886	-				-2.6
1,240,886	-				-0.6
1,240,886	-				+0.5
1,240,886	-				+0.9
1,240,966	-				-0.2
1,241,015	-				-1.0
1,241,150	+				-1.0
1,241,171	+				-0.7
1,241,171	+				+0.3
1,241,171	+				+0.3
1,241,171	+				-2.3
1,241,171	+				-2.9
1,241,171	+				+0.0
1,241,171	+				+0.6
1,241,171	+				-0.6
1,241,171	+				-2.7
1,241,172	-				+0.2
1,241,172	-				-1.3
1,241,172	-				-1.6
1,241,172	-				-2.2
1,241,172	-				-4.1
1,241,172	-				-1.0
1,241,172	-				+1.5
1,241,252	+		Sama_1026	0.14	-1.5
1,241,252	+		Sama_1026	0.14	-1.0
1,241,253	-		Sama_1026	0.14	+1.2
1,241,504	+		Sama_1026	0.29	-1.7
1,241,504	+		Sama_1026	0.29	-0.6
1,241,505	-		Sama_1026	0.30	-2.9
1,241,505	-		Sama_1026	0.30	-1.8
1,241,549	+		Sama_1026	0.32	-1.8
1,241,567	-		Sama_1026	0.33	-0.6
1,241,608	+		Sama_1026	0.36	+0.5
1,241,608	+		Sama_1026	0.36	-2.1
1,241,608	+		Sama_1026	0.36	-1.3
1,241,608	+		Sama_1026	0.36	-1.8
1,241,608	+		Sama_1026	0.36	+0.2
1,241,780	-		Sama_1026	0.46	-0.3
1,241,873	+		Sama_1026	0.52	-1.8
1,241,873	+		Sama_1026	0.52	-0.6
1,241,874	-		Sama_1026	0.52	-1.1
1,241,874	-		Sama_1026	0.52	+1.0
1,241,874	-		Sama_1026	0.52	+1.1
1,241,874	-		Sama_1026	0.52	+0.4
1,241,894	+		Sama_1026	0.53	-1.4
1,241,929	-		Sama_1026	0.55	-0.7
1,242,104	-		Sama_1026	0.66	-0.8
1,242,159	+		Sama_1026	0.69	-0.4
1,242,159	+		Sama_1026	0.69	+0.2
1,242,160	-		Sama_1026	0.69	-2.6
1,242,160	-		Sama_1026	0.69	-0.6
1,242,190	+		Sama_1026	0.71	-0.0
1,242,232	+		Sama_1026	0.73	-0.3
1,242,232	+		Sama_1026	0.73	-1.6
1,242,232	+		Sama_1026	0.73	-0.6
1,242,232	+		Sama_1026	0.73	-2.4
1,242,232	+		Sama_1026	0.73	+1.9
1,242,232	+		Sama_1026	0.73	-0.8
1,242,232	+		Sama_1026	0.73	-2.7
1,242,232	+		Sama_1026	0.73	+0.3
1,242,232	+		Sama_1026	0.73	-1.4
1,242,232	+		Sama_1026	0.73	-1.0
1,242,232	+		Sama_1026	0.73	-0.8
1,242,233	-		Sama_1026	0.73	-2.6
1,242,233	-		Sama_1026	0.73	-1.1
1,242,233	-		Sama_1026	0.73	-0.2
1,242,233	-		Sama_1026	0.73	-1.8
1,242,233	-		Sama_1026	0.73	+0.7
1,242,233	-		Sama_1026	0.73	-1.4
1,242,233	-		Sama_1026	0.73	-0.4
1,242,233	-		Sama_1026	0.73	+1.2
1,242,233	-		Sama_1026	0.73	-2.8
1,242,233	-		Sama_1026	0.73	-2.0
1,242,233	-		Sama_1026	0.73	+4.1
1,242,236	+		Sama_1026	0.73	-0.6
1,242,236	+		Sama_1026	0.73	-3.4
1,242,236	+		Sama_1026	0.73	-0.3
1,242,237	-		Sama_1026	0.74	-1.2
1,242,237	-		Sama_1026	0.74	-1.6
1,242,267	+		Sama_1026	0.75	+1.4
1,242,267	+		Sama_1026	0.75	-1.9
1,242,362	-		Sama_1026	0.81	-2.6
1,242,404	+		Sama_1026	0.84	+1.0
1,242,405	-		Sama_1026	0.84	-1.6
1,242,575	+				-1.3
1,242,576	-				-2.0
1,242,576	-				-1.3
1,242,600	-				+2.3
1,242,653	+				-1.3
1,242,653	+				-0.8
1,242,697	+				+0.0
1,242,697	+				+0.1
1,242,698	-				-2.8
1,242,698	-				+0.1
1,242,698	-				-1.0
1,242,698	-				-0.2
1,242,709	+				+0.4
1,242,715	-				+2.0
1,242,727	+				-1.3
1,242,728	-				-0.7
1,242,729	+				-0.7
1,242,730	-				+1.4
1,242,749	+				+1.7
1,242,750	-				+0.0
1,242,860	-				-0.9
1,242,891	+		Sama_1027	0.11	-1.5
1,242,892	-		Sama_1027	0.11	+0.6
1,242,892	-		Sama_1027	0.11	-0.1
1,242,911	+		Sama_1027	0.13	-0.7
1,242,911	+		Sama_1027	0.13	-0.1
1,242,995	-		Sama_1027	0.22	-0.2
1,242,995	-		Sama_1027	0.22	-1.0
1,243,000	+		Sama_1027	0.22	+2.0
1,243,138	-		Sama_1027	0.37	-2.6
1,243,141	+		Sama_1027	0.37	-1.9
1,243,141	+		Sama_1027	0.37	-0.8
1,243,141	+		Sama_1027	0.37	+0.8
1,243,201	+		Sama_1027	0.44	-2.5
1,243,261	+		Sama_1027	0.50	+0.6
1,243,261	+		Sama_1027	0.50	+1.5
1,243,301	-		Sama_1027	0.54	+2.0
1,243,301	-		Sama_1027	0.54	+0.6
1,243,301	-		Sama_1027	0.54	+0.0
1,243,301	-		Sama_1027	0.54	-0.3
1,243,301	-		Sama_1027	0.54	+0.2
1,243,337	-		Sama_1027	0.58	+0.5
1,243,407	+		Sama_1027	0.65	-1.3
1,243,495	+		Sama_1027	0.75	-0.8
1,243,495	+		Sama_1027	0.75	+0.0
1,243,496	-		Sama_1027	0.75	-2.6
1,243,496	-		Sama_1027	0.75	+0.5
1,243,496	-		Sama_1027	0.75	+0.7
1,243,496	-		Sama_1027	0.75	+1.9
1,243,496	-		Sama_1027	0.75	-0.1
1,243,507	+		Sama_1027	0.76	+0.5
1,243,507	+		Sama_1027	0.76	+2.6
1,243,507	+		Sama_1027	0.76	+0.5
1,243,507	+		Sama_1027	0.76	+1.8
1,243,507	+		Sama_1027	0.76	+0.6
1,243,507	+		Sama_1027	0.76	-1.0
1,243,507	+		Sama_1027	0.76	+0.0
1,243,507	+		Sama_1027	0.76	+0.1
1,243,507	+		Sama_1027	0.76	+3.3
1,243,507	+		Sama_1027	0.76	-1.6
1,243,507	+		Sama_1027	0.76	+2.3
1,243,507	+		Sama_1027	0.76	-0.3
1,243,507	+		Sama_1027	0.76	+0.3
1,243,508	-		Sama_1027	0.76	-1.0
1,243,508	-		Sama_1027	0.76	+0.1
1,243,508	-		Sama_1027	0.76	-3.2
1,243,508	-		Sama_1027	0.76	-1.7
1,243,508	-		Sama_1027	0.76	-0.9
1,243,508	-		Sama_1027	0.76	+1.6
1,243,508	-		Sama_1027	0.76	-2.0
1,243,508	-		Sama_1027	0.76	+1.6
1,243,508	-		Sama_1027	0.76	+2.5
1,243,511	+		Sama_1027	0.76	+0.3
1,243,511	+		Sama_1027	0.76	-1.6
1,243,511	+		Sama_1027	0.76	-1.7
1,243,511	+		Sama_1027	0.76	+1.8
1,243,511	+		Sama_1027	0.76	+0.8
1,243,511	+		Sama_1027	0.76	+0.1
1,243,511	+		Sama_1027	0.76	-3.7
1,243,511	+		Sama_1027	0.76	-1.4
1,243,511	+		Sama_1027	0.76	+0.2
1,243,511	+		Sama_1027	0.76	-2.7
1,243,511	+		Sama_1027	0.76	-0.5
1,243,512	-		Sama_1027	0.76	-2.7
1,243,512	-		Sama_1027	0.76	+0.0
1,243,512	-		Sama_1027	0.76	+0.8
1,243,512	-		Sama_1027	0.76	-2.2
1,243,512	-		Sama_1027	0.76	-0.4
1,243,512	-		Sama_1027	0.76	-0.1
1,243,512	-		Sama_1027	0.76	-1.5
1,243,512	-		Sama_1027	0.76	+1.0
1,243,512	-		Sama_1027	0.76	+1.8
1,243,535	+		Sama_1027	0.79	-1.4
1,243,535	+		Sama_1027	0.79	-1.0
1,243,536	-		Sama_1027	0.79	+1.0
1,243,595	+		Sama_1027	0.85	+1.1
1,243,596	-		Sama_1027	0.85	-1.6
1,243,619	+		Sama_1027	0.88	-0.2
1,243,619	+		Sama_1027	0.88	+2.1
1,243,619	+		Sama_1027	0.88	+0.7
1,243,619	+		Sama_1027	0.88	+4.0
1,243,620	-		Sama_1027	0.88	-2.0
1,243,620	-		Sama_1027	0.88	-1.8
1,243,622	+		Sama_1027	0.88	-1.0
1,243,622	+		Sama_1027	0.88	+1.4
1,243,622	+		Sama_1027	0.88	-1.3
1,243,623	-		Sama_1027	0.88	-1.3
1,243,623	-		Sama_1027	0.88	-1.6
1,243,623	-		Sama_1027	0.88	+1.0
1,243,623	-		Sama_1027	0.88	+1.3
1,243,628	+		Sama_1027	0.89	-1.7
1,243,629	-		Sama_1027	0.89	+0.0
1,243,629	-		Sama_1027	0.89	+1.4
1,243,629	-		Sama_1027	0.89	-0.4