Strain Fitness in Shewanella amazonensis SB2B around Sama_0918

Experiment: outer cut, LB soft agar motility assay

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	outer cut, LB soft agar motility assay
1,109,906	+				+1.3
1,109,906	+				+0.0
1,109,906	+				-0.4
1,109,906	+				-1.8
1,109,907	-				-1.1
1,109,907	-				+0.9
1,109,907	-				+2.4
1,109,913	+				-2.6
1,109,947	+				-0.5
1,109,948	-				+1.3
1,110,000	+				+2.0
1,110,000	+				-1.3
1,110,007	+				+0.8
1,110,007	+				-1.4
1,110,040	+		Sama_0917	0.13	-0.5
1,110,040	+		Sama_0917	0.13	-1.7
1,110,040	+		Sama_0917	0.13	-1.8
1,110,041	-		Sama_0917	0.13	-2.0
1,110,041	-		Sama_0917	0.13	+0.4
1,110,041	-		Sama_0917	0.13	+0.5
1,110,041	-		Sama_0917	0.13	+1.2
1,110,041	-		Sama_0917	0.13	+3.0
1,110,198	+		Sama_0917	0.34	+0.4
1,110,199	-		Sama_0917	0.34	+1.2
1,110,199	-		Sama_0917	0.34	-1.1
1,110,223	+		Sama_0917	0.37	-1.0
1,110,224	-		Sama_0917	0.37	+2.5
1,110,243	+		Sama_0917	0.40	-1.3
1,110,243	+		Sama_0917	0.40	+0.4
1,110,277	+		Sama_0917	0.44	+0.2
1,110,277	+		Sama_0917	0.44	-1.2
1,110,278	-		Sama_0917	0.44	-2.9
1,110,279	+		Sama_0917	0.44	-2.0
1,110,279	+		Sama_0917	0.44	-0.1
1,110,279	+		Sama_0917	0.44	-3.4
1,110,279	+		Sama_0917	0.44	+1.0
1,110,279	+		Sama_0917	0.44	-2.8
1,110,279	+		Sama_0917	0.44	+0.5
1,110,280	-		Sama_0917	0.44	-1.1
1,110,280	-		Sama_0917	0.44	+3.2
1,110,280	-		Sama_0917	0.44	-2.1
1,110,280	-		Sama_0917	0.44	+1.8
1,110,280	-		Sama_0917	0.44	-1.0
1,110,332	+		Sama_0917	0.51	-1.3
1,110,367	-		Sama_0917	0.56	+2.5
1,110,431	+		Sama_0917	0.64	+0.6
1,110,431	+		Sama_0917	0.64	+0.4
1,110,431	+		Sama_0917	0.64	+0.9
1,110,431	+		Sama_0917	0.64	+0.0
1,110,431	+		Sama_0917	0.64	-2.1
1,110,432	-		Sama_0917	0.64	+1.0
1,110,432	-		Sama_0917	0.64	-0.3
1,110,432	-		Sama_0917	0.64	-1.1
1,110,460	-		Sama_0917	0.68	+0.4
1,110,488	+		Sama_0917	0.71	-1.8
1,110,488	+		Sama_0917	0.71	-1.6
1,110,515	+		Sama_0917	0.75	+1.9
1,110,515	+		Sama_0917	0.75	+0.8
1,110,516	-		Sama_0917	0.75	-0.6
1,110,555	+		Sama_0917	0.80	-2.3
1,110,616	+		Sama_0917	0.88	-0.3
1,110,616	+		Sama_0917	0.88	+0.8
1,110,616	+		Sama_0917	0.88	+1.4
1,110,616	+		Sama_0917	0.88	+0.0
1,110,616	+		Sama_0917	0.88	-1.3
1,110,616	+		Sama_0917	0.88	-1.3
1,110,616	+		Sama_0917	0.88	-2.2
1,110,617	-		Sama_0917	0.88	-0.6
1,110,639	+				+1.1
1,110,640	-				-1.7
1,110,640	-				-0.1
1,110,640	-				+0.4
1,110,648	+				+0.7
1,110,649	-				-1.1
1,110,651	+				-2.6
1,110,651	+				-1.4
1,110,651	+				-2.3
1,110,651	+				-0.6
1,110,651	+				+1.3
1,110,651	+				-2.4
1,110,651	+				-1.0
1,110,651	+				-2.1
1,110,651	+				+2.0
1,110,652	-				+0.5
1,110,652	-				+0.6
1,110,652	-				+2.4
1,110,654	+				-1.1
1,110,654	+				-0.2
1,110,654	+				+0.3
1,110,654	+				-1.8
1,110,655	-				-2.0
1,110,655	-				+1.6
1,110,655	-				-0.6
1,110,655	-				+1.6
1,110,655	-				+1.0
1,110,655	-				-3.7
1,110,656	+				-1.3
1,110,656	+				+0.4
1,110,657	-				-0.7
1,110,708	+				-0.2
1,110,834	+				-0.6
1,110,868	+				-0.2
1,110,999	+		Sama_0918	0.28	-1.0
1,111,000	-		Sama_0918	0.28	-1.3
1,111,000	-		Sama_0918	0.28	-0.6
1,111,365	+				+2.0
1,111,381	+				+0.0
1,111,384	+				+0.7
1,111,403	+				-1.2
1,111,403	+				+0.4
1,111,404	-				-1.4
1,111,404	-				-1.3
1,111,469	+				-0.7
1,111,469	+				-1.8
1,111,469	+				-1.6
1,111,470	-				+1.0
1,111,470	-				+1.9
1,111,470	-				-0.5
1,111,470	-				+0.2
1,111,471	+				-1.0
1,111,471	+				+2.0
1,111,471	+				+0.7
1,111,471	+				-1.8
1,111,472	-				+0.2
1,111,472	-				-2.9
1,111,472	-				-0.5
1,111,472	-				-1.3
1,111,472	-				+0.0
1,111,472	-				-1.3
1,111,472	-				+0.7
1,111,472	-				-1.3
1,111,472	-				+0.0
1,111,472	-				+0.5
1,111,472	-				-0.6
1,111,472	-				-1.8
1,111,538	+				-0.8
1,111,538	+				+2.4
1,111,538	+				-2.6
1,111,548	-		Sama_0919	0.10	+1.1
1,111,582	+		Sama_0919	0.13	-1.0
1,111,602	+		Sama_0919	0.14	+0.1
1,111,602	+		Sama_0919	0.14	-0.9
1,111,602	+		Sama_0919	0.14	+1.9
1,111,602	+		Sama_0919	0.14	+0.5
1,111,602	+		Sama_0919	0.14	-0.8
1,111,603	-		Sama_0919	0.14	+1.0
1,111,603	-		Sama_0919	0.14	+0.4
1,111,603	-		Sama_0919	0.14	+0.4
1,111,603	-		Sama_0919	0.14	-1.8
1,111,603	-		Sama_0919	0.14	+0.2
1,111,603	-		Sama_0919	0.14	-0.6
1,111,632	+		Sama_0919	0.16	+1.0
1,111,633	-		Sama_0919	0.16	-0.7
1,111,663	+		Sama_0919	0.19	-1.3
1,111,663	+		Sama_0919	0.19	-1.1
1,111,663	+		Sama_0919	0.19	+1.6
1,111,664	-		Sama_0919	0.19	-0.2
1,111,664	-		Sama_0919	0.19	+0.9
1,111,664	-		Sama_0919	0.19	+2.6
1,111,725	-		Sama_0919	0.23	-2.9
1,111,728	+		Sama_0919	0.23	-1.8
1,111,728	+		Sama_0919	0.23	+2.0
1,111,728	+		Sama_0919	0.23	-0.8
1,111,729	-		Sama_0919	0.23	+1.8
1,111,729	-		Sama_0919	0.23	+0.7
1,111,729	-		Sama_0919	0.23	-2.8
1,111,729	-		Sama_0919	0.23	-0.7
1,111,762	-		Sama_0919	0.26	-1.6
1,111,763	+		Sama_0919	0.26	-1.3
1,111,763	+		Sama_0919	0.26	-1.8
1,111,763	+		Sama_0919	0.26	-0.7
1,111,813	+		Sama_0919	0.29	-2.0
1,111,838	+		Sama_0919	0.31	-3.2
1,111,838	+		Sama_0919	0.31	+0.4
1,111,838	+		Sama_0919	0.31	-0.6
1,111,838	+		Sama_0919	0.31	+1.9
1,111,838	+		Sama_0919	0.31	+0.0
1,111,839	-		Sama_0919	0.31	-0.5
1,111,839	-		Sama_0919	0.31	-0.2
1,111,843	+		Sama_0919	0.31	-0.7
1,111,844	-		Sama_0919	0.31	+0.7
1,111,844	-		Sama_0919	0.31	-0.6
1,111,847	-		Sama_0919	0.32	-1.8
1,111,847	-		Sama_0919	0.32	-0.6
1,112,030	+		Sama_0919	0.45	-2.8
1,112,030	+		Sama_0919	0.45	-3.1
1,112,030	+		Sama_0919	0.45	+1.0
1,112,030	+		Sama_0919	0.45	+0.5
1,112,030	+		Sama_0919	0.45	+0.9
1,112,031	-		Sama_0919	0.45	-0.8
1,112,031	-		Sama_0919	0.45	+1.1
1,112,031	-		Sama_0919	0.45	-2.3
1,112,110	+		Sama_0919	0.50	-0.7
1,112,110	+		Sama_0919	0.50	+0.7
1,112,171	+		Sama_0919	0.55	+2.2
1,112,171	+		Sama_0919	0.55	+1.0
1,112,172	-		Sama_0919	0.55	-2.8
1,112,172	-		Sama_0919	0.55	-1.1
1,112,196	+		Sama_0919	0.57	+1.3
1,112,197	-		Sama_0919	0.57	+0.4
1,112,232	+		Sama_0919	0.59	-0.6