Experiment: outer cut, LB soft agar motility assay
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0802 and Sama_0803 are separated by 153 nucleotides Sama_0803 and Sama_0804 are separated by 26 nucleotides
Sama_0802: Sama_0802 - carboxypeptidase Taq (RefSeq), at 985,300 to 986,781
_0802
Sama_0803: Sama_0803 - hypothetical protein (RefSeq), at 986,935 to 987,570
_0803
Sama_0804: Sama_0804 - hypothetical protein (RefSeq), at 987,597 to 989,354
_0804
Position (kb) 986
987
988 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 985.976 kb on + strand, within Sama_0802 at 986.022 kb on + strand, within Sama_0802 at 986.170 kb on + strand, within Sama_0802 at 986.170 kb on + strand, within Sama_0802 at 986.235 kb on + strand, within Sama_0802 at 986.235 kb on + strand, within Sama_0802 at 986.310 kb on + strand, within Sama_0802 at 986.322 kb on + strand, within Sama_0802 at 986.322 kb on + strand, within Sama_0802 at 986.322 kb on + strand, within Sama_0802 at 986.323 kb on - strand, within Sama_0802 at 986.323 kb on - strand, within Sama_0802 at 986.323 kb on - strand, within Sama_0802 at 986.327 kb on + strand, within Sama_0802 at 986.327 kb on + strand, within Sama_0802 at 986.327 kb on + strand, within Sama_0802 at 986.328 kb on - strand, within Sama_0802 at 986.328 kb on - strand, within Sama_0802 at 986.328 kb on - strand, within Sama_0802 at 986.407 kb on - strand, within Sama_0802 at 986.431 kb on - strand, within Sama_0802 at 986.525 kb on + strand, within Sama_0802 at 986.526 kb on - strand, within Sama_0802 at 986.584 kb on - strand, within Sama_0802 at 986.584 kb on - strand, within Sama_0802 at 986.584 kb on - strand, within Sama_0802 at 986.628 kb on + strand, within Sama_0802 at 986.628 kb on + strand, within Sama_0802 at 986.628 kb on + strand, within Sama_0802 at 986.628 kb on + strand, within Sama_0802 at 986.628 kb on + strand, within Sama_0802 at 986.765 kb on - strand at 986.765 kb on - strand at 986.768 kb on + strand at 986.768 kb on + strand at 986.768 kb on + strand at 986.768 kb on + strand at 986.768 kb on + strand at 986.768 kb on + strand at 986.768 kb on + strand at 986.768 kb on + strand at 986.769 kb on - strand at 986.810 kb on + strand at 986.810 kb on + strand at 986.870 kb on + strand at 986.870 kb on + strand at 986.870 kb on + strand at 986.870 kb on + strand at 986.871 kb on - strand at 986.871 kb on - strand at 986.871 kb on - strand at 986.910 kb on + strand at 986.920 kb on + strand at 986.977 kb on - strand at 986.982 kb on - strand at 986.982 kb on - strand at 986.982 kb on - strand at 986.985 kb on - strand at 986.985 kb on - strand at 987.038 kb on + strand, within Sama_0803 at 987.038 kb on + strand, within Sama_0803 at 987.038 kb on + strand, within Sama_0803 at 987.038 kb on + strand, within Sama_0803 at 987.039 kb on - strand, within Sama_0803 at 987.039 kb on - strand, within Sama_0803 at 987.084 kb on + strand, within Sama_0803 at 987.122 kb on + strand, within Sama_0803 at 987.122 kb on + strand, within Sama_0803 at 987.122 kb on + strand, within Sama_0803 at 987.122 kb on + strand, within Sama_0803 at 987.202 kb on + strand, within Sama_0803 at 987.222 kb on + strand, within Sama_0803 at 987.223 kb on - strand, within Sama_0803 at 987.224 kb on + strand, within Sama_0803 at 987.230 kb on + strand, within Sama_0803 at 987.230 kb on + strand, within Sama_0803 at 987.230 kb on + strand, within Sama_0803 at 987.230 kb on + strand, within Sama_0803 at 987.359 kb on + strand, within Sama_0803 at 987.359 kb on + strand, within Sama_0803 at 987.359 kb on + strand, within Sama_0803 at 987.359 kb on + strand, within Sama_0803 at 987.359 kb on + strand, within Sama_0803 at 987.360 kb on - strand, within Sama_0803 at 987.360 kb on - strand, within Sama_0803 at 987.360 kb on - strand, within Sama_0803 at 987.360 kb on - strand, within Sama_0803 at 987.360 kb on - strand, within Sama_0803 at 987.360 kb on - strand, within Sama_0803 at 987.390 kb on + strand, within Sama_0803 at 987.391 kb on - strand, within Sama_0803 at 987.391 kb on - strand, within Sama_0803 at 987.407 kb on + strand, within Sama_0803 at 987.435 kb on - strand, within Sama_0803 at 987.460 kb on + strand, within Sama_0803 at 987.460 kb on + strand, within Sama_0803 at 987.460 kb on + strand, within Sama_0803 at 987.460 kb on + strand, within Sama_0803 at 987.460 kb on + strand, within Sama_0803 at 987.460 kb on + strand, within Sama_0803 at 987.461 kb on - strand, within Sama_0803 at 987.461 kb on - strand, within Sama_0803 at 987.464 kb on + strand, within Sama_0803 at 987.464 kb on + strand, within Sama_0803 at 987.464 kb on + strand, within Sama_0803 at 987.464 kb on + strand, within Sama_0803 at 987.465 kb on - strand, within Sama_0803 at 987.465 kb on - strand, within Sama_0803 at 987.465 kb on - strand, within Sama_0803 at 987.465 kb on - strand, within Sama_0803 at 987.465 kb on - strand, within Sama_0803 at 987.465 kb on - strand, within Sama_0803 at 987.515 kb on + strand at 987.515 kb on + strand at 987.516 kb on - strand at 987.516 kb on - strand at 987.522 kb on + strand at 987.523 kb on - strand at 987.568 kb on + strand at 987.568 kb on + strand at 987.568 kb on + strand at 987.569 kb on - strand at 987.578 kb on + strand at 987.578 kb on + strand at 987.579 kb on - strand at 987.579 kb on - strand at 987.579 kb on - strand at 987.579 kb on - strand at 987.582 kb on + strand at 987.582 kb on + strand at 987.582 kb on + strand at 987.583 kb on - strand at 987.583 kb on - strand at 987.595 kb on - strand at 987.635 kb on + strand at 987.635 kb on + strand at 987.635 kb on + strand at 987.635 kb on + strand at 987.635 kb on + strand at 987.636 kb on - strand at 987.636 kb on - strand at 987.636 kb on - strand at 987.636 kb on - strand at 987.636 kb on - strand at 987.646 kb on + strand at 987.647 kb on - strand at 987.661 kb on + strand at 987.676 kb on + strand at 987.763 kb on + strand at 987.764 kb on - strand at 987.793 kb on + strand, within Sama_0804 at 987.818 kb on + strand, within Sama_0804 at 987.818 kb on + strand, within Sama_0804 at 987.825 kb on - strand, within Sama_0804 at 987.833 kb on + strand, within Sama_0804 at 987.833 kb on + strand, within Sama_0804 at 987.833 kb on + strand, within Sama_0804 at 987.833 kb on + strand, within Sama_0804 at 987.834 kb on - strand, within Sama_0804 at 987.866 kb on + strand, within Sama_0804 at 987.909 kb on + strand, within Sama_0804 at 987.909 kb on + strand, within Sama_0804 at 987.910 kb on - strand, within Sama_0804 at 987.910 kb on - strand, within Sama_0804 at 987.910 kb on - strand, within Sama_0804 at 987.910 kb on - strand, within Sama_0804 at 987.910 kb on - strand, within Sama_0804 at 987.971 kb on + strand, within Sama_0804 at 988.307 kb on + strand, within Sama_0804 at 988.391 kb on + strand, within Sama_0804 at 988.483 kb on + strand, within Sama_0804 at 988.562 kb on + strand, within Sama_0804
Per-strain Table
Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay remove 985,976 + Sama_0802 0.46 +0.7 986,022 + Sama_0802 0.49 -1.3 986,170 + Sama_0802 0.59 +1.6 986,170 + Sama_0802 0.59 +1.1 986,235 + Sama_0802 0.63 +1.5 986,235 + Sama_0802 0.63 -1.3 986,310 + Sama_0802 0.68 +0.5 986,322 + Sama_0802 0.69 -2.9 986,322 + Sama_0802 0.69 -1.7 986,322 + Sama_0802 0.69 +3.0 986,323 - Sama_0802 0.69 -1.9 986,323 - Sama_0802 0.69 -1.0 986,323 - Sama_0802 0.69 -1.7 986,327 + Sama_0802 0.69 -0.9 986,327 + Sama_0802 0.69 +0.4 986,327 + Sama_0802 0.69 +2.2 986,328 - Sama_0802 0.69 +0.4 986,328 - Sama_0802 0.69 -2.1 986,328 - Sama_0802 0.69 -2.9 986,407 - Sama_0802 0.75 -0.3 986,431 - Sama_0802 0.76 +1.3 986,525 + Sama_0802 0.83 -3.7 986,526 - Sama_0802 0.83 -1.5 986,584 - Sama_0802 0.87 +1.2 986,584 - Sama_0802 0.87 -2.3 986,584 - Sama_0802 0.87 +0.5 986,628 + Sama_0802 0.90 -3.4 986,628 + Sama_0802 0.90 +0.3 986,628 + Sama_0802 0.90 +0.0 986,628 + Sama_0802 0.90 +0.1 986,628 + Sama_0802 0.90 +0.4 986,765 - +1.4 986,765 - -1.9 986,768 + +1.1 986,768 + +0.9 986,768 + -2.3 986,768 + -2.8 986,768 + +1.4 986,768 + +0.7 986,768 + +1.6 986,768 + -0.2 986,769 - -0.9 986,810 + +2.5 986,810 + -0.1 986,870 + -0.5 986,870 + -0.4 986,870 + +0.7 986,870 + +1.1 986,871 - -0.3 986,871 - -1.7 986,871 - +0.5 986,910 + +1.4 986,920 + -3.2 986,977 - +1.1 986,982 - -2.4 986,982 - -0.4 986,982 - -0.4 986,985 - +0.1 986,985 - -2.4 987,038 + Sama_0803 0.16 +2.1 987,038 + Sama_0803 0.16 +0.6 987,038 + Sama_0803 0.16 +0.2 987,038 + Sama_0803 0.16 -0.7 987,039 - Sama_0803 0.16 -0.3 987,039 - Sama_0803 0.16 -2.3 987,084 + Sama_0803 0.23 +0.5 987,122 + Sama_0803 0.29 +1.6 987,122 + Sama_0803 0.29 +0.6 987,122 + Sama_0803 0.29 -0.2 987,122 + Sama_0803 0.29 -3.1 987,202 + Sama_0803 0.42 -0.9 987,222 + Sama_0803 0.45 +0.3 987,223 - Sama_0803 0.45 +2.9 987,224 + Sama_0803 0.45 -1.9 987,230 + Sama_0803 0.46 +0.6 987,230 + Sama_0803 0.46 +1.7 987,230 + Sama_0803 0.46 +3.7 987,230 + Sama_0803 0.46 +1.8 987,359 + Sama_0803 0.67 +1.9 987,359 + Sama_0803 0.67 +1.4 987,359 + Sama_0803 0.67 -2.5 987,359 + Sama_0803 0.67 +0.5 987,359 + Sama_0803 0.67 +0.1 987,360 - Sama_0803 0.67 +0.1 987,360 - Sama_0803 0.67 +1.1 987,360 - Sama_0803 0.67 -1.5 987,360 - Sama_0803 0.67 -0.3 987,360 - Sama_0803 0.67 -1.3 987,360 - Sama_0803 0.67 +1.6 987,390 + Sama_0803 0.72 +3.1 987,391 - Sama_0803 0.72 -0.3 987,391 - Sama_0803 0.72 +4.0 987,407 + Sama_0803 0.74 -1.5 987,435 - Sama_0803 0.79 -0.2 987,460 + Sama_0803 0.83 +1.4 987,460 + Sama_0803 0.83 -2.3 987,460 + Sama_0803 0.83 +1.2 987,460 + Sama_0803 0.83 +0.8 987,460 + Sama_0803 0.83 +1.1 987,460 + Sama_0803 0.83 -2.4 987,461 - Sama_0803 0.83 -2.4 987,461 - Sama_0803 0.83 -0.3 987,464 + Sama_0803 0.83 +0.4 987,464 + Sama_0803 0.83 -0.4 987,464 + Sama_0803 0.83 -0.5 987,464 + Sama_0803 0.83 -1.5 987,465 - Sama_0803 0.83 +0.3 987,465 - Sama_0803 0.83 -1.8 987,465 - Sama_0803 0.83 -1.3 987,465 - Sama_0803 0.83 -1.3 987,465 - Sama_0803 0.83 +0.7 987,465 - Sama_0803 0.83 -0.5 987,515 + -0.9 987,515 + -1.5 987,516 - +1.1 987,516 - -2.1 987,522 + -1.7 987,523 - -1.3 987,568 + +0.2 987,568 + +1.7 987,568 + +2.2 987,569 - +0.2 987,578 + -0.9 987,578 + +4.8 987,579 - +1.4 987,579 - -0.5 987,579 - -1.3 987,579 - -1.8 987,582 + -1.4 987,582 + -1.7 987,582 + +0.4 987,583 - +2.7 987,583 - -1.7 987,595 - +1.2 987,635 + -0.5 987,635 + -1.7 987,635 + -2.1 987,635 + -0.6 987,635 + -0.4 987,636 - -1.7 987,636 - -1.3 987,636 - -0.7 987,636 - -1.5 987,636 - -0.3 987,646 + +3.0 987,647 - -1.1 987,661 + +0.3 987,676 + -1.5 987,763 + -3.0 987,764 - -3.0 987,793 + Sama_0804 0.11 +0.7 987,818 + Sama_0804 0.13 +2.8 987,818 + Sama_0804 0.13 +0.1 987,825 - Sama_0804 0.13 +0.7 987,833 + Sama_0804 0.13 -1.8 987,833 + Sama_0804 0.13 -0.9 987,833 + Sama_0804 0.13 -0.2 987,833 + Sama_0804 0.13 -0.0 987,834 - Sama_0804 0.13 +0.7 987,866 + Sama_0804 0.15 -0.0 987,909 + Sama_0804 0.18 +1.0 987,909 + Sama_0804 0.18 +0.7 987,910 - Sama_0804 0.18 +0.8 987,910 - Sama_0804 0.18 -2.5 987,910 - Sama_0804 0.18 -0.5 987,910 - Sama_0804 0.18 -0.5 987,910 - Sama_0804 0.18 +1.8 987,971 + Sama_0804 0.21 +0.9 988,307 + Sama_0804 0.40 +1.5 988,391 + Sama_0804 0.45 +3.3 988,483 + Sama_0804 0.50 -0.6 988,562 + Sama_0804 0.55 -0.5
Or see this region's nucleotide sequence