Strain Fitness in Shewanella amazonensis SB2B around Sama_0110

Experiment: outer cut, LB soft agar motility assay

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	outer cut, LB soft agar motility assay
122,578	+		Sama_0109	0.37	-1.5
122,633	+		Sama_0109	0.41	+0.3
122,633	+		Sama_0109	0.41	-0.7
122,633	+		Sama_0109	0.41	-1.5
122,633	+		Sama_0109	0.41	-0.5
122,634	-		Sama_0109	0.41	-1.2
122,634	-		Sama_0109	0.41	+0.7
122,634	-		Sama_0109	0.41	+0.6
122,634	-		Sama_0109	0.41	-1.5
122,634	-		Sama_0109	0.41	-1.6
122,634	-		Sama_0109	0.41	-1.4
122,634	-		Sama_0109	0.41	+0.3
122,634	-		Sama_0109	0.41	-0.0
122,635	+		Sama_0109	0.41	-1.0
122,635	+		Sama_0109	0.41	-0.7
122,635	+		Sama_0109	0.41	+0.3
122,635	+		Sama_0109	0.41	+0.3
122,635	+		Sama_0109	0.41	-1.5
122,636	-		Sama_0109	0.41	-3.0
122,636	-		Sama_0109	0.41	-2.0
122,636	-		Sama_0109	0.41	-0.8
122,692	-		Sama_0109	0.46	-0.5
122,715	+		Sama_0109	0.48	-1.8
122,715	+		Sama_0109	0.48	-2.1
122,715	+		Sama_0109	0.48	-0.6
122,715	+		Sama_0109	0.48	-0.2
122,715	+		Sama_0109	0.48	-1.7
122,716	-		Sama_0109	0.48	-2.1
122,716	-		Sama_0109	0.48	-0.9
122,716	-		Sama_0109	0.48	-0.9
122,716	-		Sama_0109	0.48	+1.2
122,716	-		Sama_0109	0.48	-0.5
122,716	-		Sama_0109	0.48	+0.0
122,718	+		Sama_0109	0.48	-0.3
122,718	+		Sama_0109	0.48	-0.6
122,718	+		Sama_0109	0.48	+0.1
122,719	-		Sama_0109	0.48	-3.3
122,719	-		Sama_0109	0.48	-3.3
122,719	-		Sama_0109	0.48	-0.3
122,719	-		Sama_0109	0.48	-1.7
122,719	-		Sama_0109	0.48	-0.7
122,719	-		Sama_0109	0.48	+0.5
122,785	+		Sama_0109	0.54	-1.4
122,785	+		Sama_0109	0.54	+0.6
122,785	+		Sama_0109	0.54	-1.8
122,786	-		Sama_0109	0.54	-1.8
122,786	-		Sama_0109	0.54	-1.5
122,786	-		Sama_0109	0.54	-2.7
122,798	+		Sama_0109	0.55	-0.3
122,798	+		Sama_0109	0.55	+0.9
122,798	+		Sama_0109	0.55	-0.1
122,798	+		Sama_0109	0.55	-0.1
122,799	-		Sama_0109	0.55	-2.0
122,799	-		Sama_0109	0.55	-2.9
122,799	-		Sama_0109	0.55	+0.3
122,799	-		Sama_0109	0.55	-1.2
122,808	+		Sama_0109	0.56	+2.0
122,808	+		Sama_0109	0.56	+1.6
122,809	-		Sama_0109	0.56	+2.8
122,809	-		Sama_0109	0.56	+1.8
122,809	-		Sama_0109	0.56	-1.8
122,816	-		Sama_0109	0.56	-3.6
122,816	-		Sama_0109	0.56	+0.4
122,816	-		Sama_0109	0.56	-0.9
122,816	-		Sama_0109	0.56	+0.0
122,865	+		Sama_0109	0.60	-1.5
122,865	+		Sama_0109	0.60	-2.1
122,865	+		Sama_0109	0.60	-1.4
122,865	+		Sama_0109	0.60	-1.8
122,865	+		Sama_0109	0.60	+1.6
122,865	+		Sama_0109	0.60	+0.9
122,865	+		Sama_0109	0.60	-2.1
122,866	-		Sama_0109	0.60	+0.0
122,866	-		Sama_0109	0.60	-1.5
122,866	-		Sama_0109	0.60	+1.8
122,885	-		Sama_0109	0.62	-1.3
122,902	+		Sama_0109	0.63	-3.0
122,920	+		Sama_0109	0.65	-2.7
122,920	+		Sama_0109	0.65	-0.8
122,920	+		Sama_0109	0.65	-3.3
122,968	+		Sama_0109	0.69	+0.3
122,968	+		Sama_0109	0.69	-3.2
122,968	+		Sama_0109	0.69	-3.5
122,969	-		Sama_0109	0.69	-1.5
123,041	-		Sama_0109	0.75	+0.1
123,041	-		Sama_0109	0.75	-2.7
123,041	-		Sama_0109	0.75	+0.2
123,079	+		Sama_0109	0.78	+1.9
123,079	+		Sama_0109	0.78	-2.2
123,079	+		Sama_0109	0.78	-0.2
123,080	-		Sama_0109	0.78	-2.8
123,080	-		Sama_0109	0.78	-0.7
123,080	-		Sama_0109	0.78	-0.0
123,080	-		Sama_0109	0.78	+0.5
123,139	+		Sama_0109	0.83	-0.8
123,139	+		Sama_0109	0.83	-0.8
123,139	+		Sama_0109	0.83	-2.6
123,139	+		Sama_0109	0.83	+0.6
123,139	+		Sama_0109	0.83	-1.7
123,139	+		Sama_0109	0.83	-0.6
123,140	-		Sama_0109	0.83	-2.5
123,140	-		Sama_0109	0.83	-2.9
123,140	-		Sama_0109	0.83	-0.2
123,140	-		Sama_0109	0.83	-4.4
123,140	-		Sama_0109	0.83	-2.9
123,140	-		Sama_0109	0.83	-1.0
123,140	-		Sama_0109	0.83	-0.8
123,140	-		Sama_0109	0.83	-0.8
123,140	-		Sama_0109	0.83	-0.9
123,140	-		Sama_0109	0.83	+1.5
123,140	-		Sama_0109	0.83	-1.8
123,140	-		Sama_0109	0.83	+2.2
123,140	-		Sama_0109	0.83	-0.3
123,140	-		Sama_0109	0.83	-3.9
123,140	-		Sama_0109	0.83	+0.3
123,142	-		Sama_0109	0.83	-3.3
123,142	-		Sama_0109	0.83	-0.3
123,161	+		Sama_0109	0.85	-1.4
123,161	+		Sama_0109	0.85	-1.7
123,162	-		Sama_0109	0.85	-1.6
123,275	-				-0.8
123,283	+				-0.8
123,283	+				+0.7
123,284	-				-2.7
123,284	-				+2.6
123,307	+				-0.1
123,308	-				-1.1
123,327	+				-2.6
123,327	+				-0.2
123,327	+				-1.6
123,327	+				-1.2
123,328	-				-3.3
123,328	-				-1.3
123,328	-				-3.2
123,379	+				-1.6
123,380	-				-0.7
123,380	-				-0.7
123,380	-				+1.1
123,382	+				-1.5
123,484	+				+0.6
123,484	+				-0.7
123,485	-				-0.7
123,485	-				-0.0
123,488	+				-2.6
123,488	+				+0.7
123,488	+				+1.9
123,488	+				-3.0
123,489	-				+2.3
123,563	+				-2.7
123,563	+				+1.3
123,563	+				+0.1
123,563	+				-0.7
123,563	+				-1.7
123,563	+				-0.7
123,564	-				-2.7
123,564	-				+2.6
123,564	-				+0.9
123,564	-				-2.7
123,607	+		Sama_0110	0.10	+1.0
123,630	+		Sama_0110	0.14	+0.3
123,630	+		Sama_0110	0.14	-0.7
123,630	+		Sama_0110	0.14	-2.7
123,630	+		Sama_0110	0.14	-1.0
123,630	+		Sama_0110	0.14	-1.0
123,630	+		Sama_0110	0.14	-3.1
123,630	+		Sama_0110	0.14	-1.8
123,630	+		Sama_0110	0.14	-3.4
123,630	+		Sama_0110	0.14	-2.4
123,630	+		Sama_0110	0.14	+1.3
123,630	+		Sama_0110	0.14	-1.0
123,630	+		Sama_0110	0.14	-3.4
123,630	+		Sama_0110	0.14	-1.2
123,630	+		Sama_0110	0.14	-2.4
123,630	+		Sama_0110	0.14	-1.2
123,632	+		Sama_0110	0.15	-0.2
123,632	+		Sama_0110	0.15	-0.2
123,632	+		Sama_0110	0.15	+0.3
123,632	+		Sama_0110	0.15	-0.7
123,632	+		Sama_0110	0.15	-1.8
123,632	+		Sama_0110	0.15	-0.2
123,632	+		Sama_0110	0.15	-2.5
124,093	+				-1.2
124,093	+				-2.2
124,094	-				+1.2
124,110	-				-2.7
124,124	+				+0.7
124,124	+				+1.5
124,124	+				+0.1
124,124	+				+0.7
124,124	+				-0.2
124,124	+				+1.6
124,125	-				-1.8
124,136	+				-1.5
124,143	+				-2.4
124,143	+				-1.8
124,143	+				-2.4
124,143	+				-1.7
124,143	+				+0.3
124,143	+				-0.7
124,143	+				+0.5
124,153	+				-0.7
124,153	+				-2.0