Strain Fitness in Shewanella amazonensis SB2B around Sama_0065

Experiment: outer cut, LB soft agar motility assay

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	outer cut, LB soft agar motility assay
69,924	+		Sama_0064	0.65	+0.1
69,924	+		Sama_0064	0.65	-1.2
69,924	+		Sama_0064	0.65	-1.7
69,924	+		Sama_0064	0.65	-0.5
69,924	+		Sama_0064	0.65	-3.1
69,924	+		Sama_0064	0.65	+1.9
69,924	+		Sama_0064	0.65	+2.3
69,924	+		Sama_0064	0.65	-1.7
69,924	+		Sama_0064	0.65	+1.6
69,924	+		Sama_0064	0.65	+1.3
69,924	+		Sama_0064	0.65	-0.9
69,924	+		Sama_0064	0.65	+1.7
69,924	+		Sama_0064	0.65	+1.1
69,925	-		Sama_0064	0.65	+0.8
69,925	-		Sama_0064	0.65	-2.0
69,925	-		Sama_0064	0.65	+0.3
69,925	-		Sama_0064	0.65	-0.2
69,925	-		Sama_0064	0.65	+1.6
69,925	-		Sama_0064	0.65	-2.7
69,925	-		Sama_0064	0.65	-0.6
69,925	-		Sama_0064	0.65	-2.7
69,925	-		Sama_0064	0.65	-1.2
69,925	-		Sama_0064	0.65	-1.7
69,925	-		Sama_0064	0.65	-1.2
69,925	-		Sama_0064	0.65	-0.0
69,925	-		Sama_0064	0.65	-2.8
69,925	-		Sama_0064	0.65	-1.1
70,008	+		Sama_0064	0.72	-0.6
70,053	+		Sama_0064	0.75	+0.4
70,053	+		Sama_0064	0.75	+0.6
70,053	+		Sama_0064	0.75	+0.2
70,053	+		Sama_0064	0.75	+0.1
70,053	+		Sama_0064	0.75	+0.7
70,053	+		Sama_0064	0.75	-0.5
70,053	+		Sama_0064	0.75	-0.3
70,054	-		Sama_0064	0.76	-0.4
70,054	-		Sama_0064	0.76	+0.3
70,054	-		Sama_0064	0.76	-0.2
70,070	-		Sama_0064	0.77	+0.5
70,118	+		Sama_0064	0.81	-1.7
70,119	-		Sama_0064	0.81	-1.0
70,119	-		Sama_0064	0.81	+0.3
70,119	-		Sama_0064	0.81	-1.5
70,195	+		Sama_0064	0.87	+0.9
70,196	-		Sama_0064	0.87	+1.5
70,247	+				+1.0
70,247	+				-1.9
70,248	-				-0.4
70,292	+				-0.7
70,344	-				+1.2
70,367	+				-1.0
70,404	+				-1.2
70,404	+				-2.2
70,405	-				+1.8
70,405	-				-0.2
70,405	-				+0.3
70,405	-				-1.1
70,405	-				+0.5
70,496	+				+1.3
70,496	+				-3.4
70,497	-				+1.5
70,497	-				+0.6
70,497	-				-0.4
70,497	-				-2.2
70,541	+				+2.2
70,577	+				-2.5
70,598	-				-2.4
70,656	+				+2.2
70,656	+				+0.1
70,656	+				-1.2
70,656	+				-1.0
70,656	+				+1.1
70,656	+				+1.6
70,656	+				-1.9
70,657	-				+0.9
70,657	-				+0.2
70,657	-				+0.3
70,657	-				-0.6
70,657	-				+0.7
70,657	-				+0.9
70,657	-				-1.1
70,657	-				-1.7
70,657	-				-2.5
70,657	-				-0.5
70,657	-				-0.8
70,657	-				+1.9
70,684	+				+0.1
70,684	+				+4.0
70,684	+				+1.2
70,685	-				-1.7
70,691	+				-1.5
70,691	+				+1.9
70,692	-				+1.3
70,727	+				-2.1
70,728	-				-1.0
70,728	-				+0.7
70,751	+				-2.2
70,751	+				+0.9
70,751	+				+0.8
70,751	+				+0.8
70,751	+				+0.9
70,752	-				-1.7
70,753	+				+1.1
70,753	+				-0.5
70,753	+				+1.1
70,753	+				-0.7
70,753	+				-1.0
70,753	+				+1.8
70,753	+				+0.7
70,753	+				+2.1
70,753	+				+0.5
70,753	+				-0.2
70,753	+				-0.5
70,753	+				-1.0
70,753	+				+0.5
70,753	+				+1.2
70,753	+				-2.9
70,753	+				-1.2
70,753	+				+0.4
70,753	+				+3.1
70,753	+				+1.0
70,754	-				-1.5
70,754	-				+0.3
70,754	-				-0.7
70,754	-				-2.3
70,754	-				-2.0
70,754	-				-3.4
70,754	-				+2.7
70,754	-				-1.5
70,754	-				+1.8
70,754	-				-1.1
70,754	-				+1.1
70,754	-				-0.7
70,754	-				+0.1
70,754	-				-0.6
70,754	-				-0.2
70,754	-				+0.7
70,754	-				-0.2
70,754	-				+1.2
70,754	-				+1.4
70,754	-				+2.9
70,754	-				-1.7
70,754	-				+0.6
70,754	-				-1.6
70,754	-				-2.9
70,759	+				+0.6
70,759	+				+2.8
70,759	+				+1.3
70,767	+				+1.8
70,767	+				+1.9
70,768	-				+1.2
70,768	-				+1.7
70,787	+				+3.0
70,788	-				+3.2
70,790	+				+3.5
70,790	+				+1.6
70,790	+				+1.6
70,790	+				+3.1
70,790	+				-3.0
70,791	-				-0.7
70,817	-				-0.5
70,821	+				-0.5
70,821	+				+2.2
70,821	+				-1.8
70,822	-				+0.7
70,822	-				-4.0
70,847	+				-2.7
70,847	+				-1.5
70,857	+				-2.2
70,878	+				+2.3
70,878	+				+1.3
70,924	+				-1.7
70,924	+				-0.0
70,924	+				+3.0
70,924	+				-1.0
70,924	+				+1.3
70,924	+				+0.9
70,924	+				+0.6
70,925	-				-2.2
70,925	-				-0.6
70,925	-				-0.1
70,925	-				+0.6
70,925	-				+2.2
70,925	-				-3.7
70,931	+				+0.0
70,931	+				+1.0
70,931	+				-1.7
70,931	+				+1.1
70,932	-				+0.6
70,932	-				+2.7
70,932	-				+0.0
70,932	-				+0.0
70,950	+				+0.8
70,968	-				+0.2
71,013	+		Sama_0065	0.11	+1.6
71,013	+		Sama_0065	0.11	+1.3
71,014	-		Sama_0065	0.11	-0.1
71,082	-		Sama_0065	0.19	-2.1
71,082	-		Sama_0065	0.19	-0.7
71,101	+		Sama_0065	0.21	+0.6
71,102	-		Sama_0065	0.21	-0.6
71,102	-		Sama_0065	0.21	-2.4
71,102	-		Sama_0065	0.21	+1.4
71,102	-		Sama_0065	0.21	-2.9
71,102	-		Sama_0065	0.21	-1.7
71,120	+		Sama_0065	0.23	+0.3
71,120	+		Sama_0065	0.23	-1.5
71,195	-		Sama_0065	0.31	-0.3
71,221	+		Sama_0065	0.34	+1.9
71,221	+		Sama_0065	0.34	+0.1
71,222	-		Sama_0065	0.34	-0.7
71,222	-		Sama_0065	0.34	-0.4
71,222	-		Sama_0065	0.34	+1.4
71,222	-		Sama_0065	0.34	+1.8
71,222	-		Sama_0065	0.34	-1.9
71,249	+		Sama_0065	0.37	+0.4
71,249	+		Sama_0065	0.37	-0.4
71,250	-		Sama_0065	0.37	+0.9
71,276	+		Sama_0065	0.40	-0.4
71,276	+		Sama_0065	0.40	+0.5
71,276	+		Sama_0065	0.40	+4.0
71,276	+		Sama_0065	0.40	-0.9
71,277	-		Sama_0065	0.40	+1.3
71,277	-		Sama_0065	0.40	-1.5
71,277	-		Sama_0065	0.40	+0.2
71,277	-		Sama_0065	0.40	-1.0
71,277	-		Sama_0065	0.40	+0.3
71,277	-		Sama_0065	0.40	-0.2
71,277	-		Sama_0065	0.40	+1.5
71,277	-		Sama_0065	0.40	+0.3
71,277	-		Sama_0065	0.40	-2.6
71,339	+		Sama_0065	0.47	-1.2
71,339	+		Sama_0065	0.47	+1.8
71,340	-		Sama_0065	0.47	+1.7
71,341	+		Sama_0065	0.47	+1.9
71,341	+		Sama_0065	0.47	+1.4
71,341	+		Sama_0065	0.47	-1.0
71,341	+		Sama_0065	0.47	-0.7
71,341	+		Sama_0065	0.47	-1.7
71,341	+		Sama_0065	0.47	+0.6
71,341	+		Sama_0065	0.47	+0.5
71,341	+		Sama_0065	0.47	-0.5
71,341	+		Sama_0065	0.47	-1.5
71,341	+		Sama_0065	0.47	-1.1
71,342	-		Sama_0065	0.47	-3.6
71,342	-		Sama_0065	0.47	+0.5
71,342	-		Sama_0065	0.47	+0.5
71,342	-		Sama_0065	0.47	-0.2
71,342	-		Sama_0065	0.47	+0.2
71,342	-		Sama_0065	0.47	-1.7
71,342	-		Sama_0065	0.47	+1.1
71,342	-		Sama_0065	0.47	+1.3
71,343	+		Sama_0065	0.47	-1.2
71,343	+		Sama_0065	0.47	-1.0
71,344	-		Sama_0065	0.47	+0.7
71,344	-		Sama_0065	0.47	-0.8
71,344	-		Sama_0065	0.47	+1.2
71,344	-		Sama_0065	0.47	-0.2
71,344	-		Sama_0065	0.47	+0.5
71,344	-		Sama_0065	0.47	-2.8
71,344	-		Sama_0065	0.47	-2.4
71,403	+		Sama_0065	0.53	-1.4
71,404	-		Sama_0065	0.54	-1.7
71,424	-		Sama_0065	0.56	+1.6
71,424	-		Sama_0065	0.56	-0.2
71,424	-		Sama_0065	0.56	-3.4
71,457	+		Sama_0065	0.59	+1.1
71,458	-		Sama_0065	0.59	-0.1
71,458	-		Sama_0065	0.59	+0.8
71,458	-		Sama_0065	0.59	-1.2
71,458	-		Sama_0065	0.59	-2.0
71,458	-		Sama_0065	0.59	+2.0
71,461	+		Sama_0065	0.60	+1.2
71,461	+		Sama_0065	0.60	-0.1
71,461	+		Sama_0065	0.60	+3.1
71,461	+		Sama_0065	0.60	+0.3
71,461	+		Sama_0065	0.60	+2.1
71,461	+		Sama_0065	0.60	+0.9
71,461	+		Sama_0065	0.60	+1.1
71,461	+		Sama_0065	0.60	-2.0
71,461	+		Sama_0065	0.60	-0.2
71,461	+		Sama_0065	0.60	+0.7
71,461	+		Sama_0065	0.60	-0.5
71,461	+		Sama_0065	0.60	-0.7
71,461	+		Sama_0065	0.60	+2.1
71,461	+		Sama_0065	0.60	+1.4
71,461	+		Sama_0065	0.60	-0.1
71,461	+		Sama_0065	0.60	+1.9
71,462	-		Sama_0065	0.60	-3.6
71,462	-		Sama_0065	0.60	-2.4
71,462	-		Sama_0065	0.60	-2.9
71,462	-		Sama_0065	0.60	-2.7
71,462	-		Sama_0065	0.60	+1.7
71,462	-		Sama_0065	0.60	+1.7
71,462	-		Sama_0065	0.60	+1.7
71,462	-		Sama_0065	0.60	+1.1
71,462	-		Sama_0065	0.60	-1.5
71,462	-		Sama_0065	0.60	-0.4
71,462	-		Sama_0065	0.60	+0.0
71,462	-		Sama_0065	0.60	+0.0
71,462	-		Sama_0065	0.60	+0.7
71,462	-		Sama_0065	0.60	-2.9
71,462	-		Sama_0065	0.60	-2.8
71,462	-		Sama_0065	0.60	-0.2
71,462	-		Sama_0065	0.60	+1.1
71,462	-		Sama_0065	0.60	-1.6
71,462	-		Sama_0065	0.60	-2.2
71,462	-		Sama_0065	0.60	+2.5
71,462	-		Sama_0065	0.60	-0.2
71,486	+		Sama_0065	0.63	+1.5
71,486	+		Sama_0065	0.63	+0.4
71,486	+		Sama_0065	0.63	-2.0
71,486	+		Sama_0065	0.63	+1.6
71,487	-		Sama_0065	0.63	+0.2
71,549	+		Sama_0065	0.69	+1.3
71,550	-		Sama_0065	0.69	+0.3
71,550	-		Sama_0065	0.69	+0.1
71,583	+		Sama_0065	0.73	-1.0
71,583	+		Sama_0065	0.73	-2.7
71,584	-		Sama_0065	0.73	+0.1
71,639	+		Sama_0065	0.79	-1.6
71,639	+		Sama_0065	0.79	+2.2
71,640	-		Sama_0065	0.79	-1.5
71,640	-		Sama_0065	0.79	-0.4
71,655	+		Sama_0065	0.81	+2.8
71,655	+		Sama_0065	0.81	+3.0
71,656	-		Sama_0065	0.81	+0.7
71,656	-		Sama_0065	0.81	-0.2
71,656	-		Sama_0065	0.81	+1.3
71,661	+		Sama_0065	0.82	+0.5
71,682	-		Sama_0065	0.84	+0.5
71,695	+		Sama_0065	0.85	-0.5
71,695	+		Sama_0065	0.85	+1.2
71,695	+		Sama_0065	0.85	+1.8
71,695	+		Sama_0065	0.85	-2.4
71,696	-		Sama_0065	0.85	-1.8
71,696	-		Sama_0065	0.85	-1.1
71,696	-		Sama_0065	0.85	-0.7
71,696	-		Sama_0065	0.85	-1.0
71,697	+		Sama_0065	0.86	+1.3
71,698	-		Sama_0065	0.86	+2.1
71,743	+				-1.5
71,744	-				+1.5
71,744	-				+4.9
71,943	+		Sama_0066	0.10	-1.6
71,944	-		Sama_0066	0.11	+0.8
71,955	+		Sama_0066	0.12	-0.4
71,955	+		Sama_0066	0.12	+0.6
71,956	-		Sama_0066	0.12	-0.5
71,980	-		Sama_0066	0.14	+2.7
71,980	-		Sama_0066	0.14	+1.3
71,980	-		Sama_0066	0.14	-1.8
72,046	-		Sama_0066	0.21	-1.5
72,071	+		Sama_0066	0.24	+1.1
72,116	+		Sama_0066	0.29	+0.1
72,116	+		Sama_0066	0.29	-0.8
72,117	-		Sama_0066	0.29	+1.5
72,130	+		Sama_0066	0.30	+0.4
72,130	+		Sama_0066	0.30	-2.3
72,130	+		Sama_0066	0.30	+0.3
72,130	+		Sama_0066	0.30	+0.5
72,130	+		Sama_0066	0.30	+1.2
72,130	+		Sama_0066	0.30	+1.7
72,130	+		Sama_0066	0.30	-3.0
72,131	-		Sama_0066	0.30	-2.8
72,131	-		Sama_0066	0.30	-0.9
72,131	-		Sama_0066	0.30	+1.9
72,131	-		Sama_0066	0.30	-1.4
72,131	-		Sama_0066	0.30	-1.5
72,131	-		Sama_0066	0.30	+0.6
72,131	-		Sama_0066	0.30	+0.3
72,133	+		Sama_0066	0.30	+0.7
72,133	+		Sama_0066	0.30	-1.7
72,133	+		Sama_0066	0.30	-0.8
72,133	+		Sama_0066	0.30	-0.0
72,134	-		Sama_0066	0.30	-1.1
72,134	-		Sama_0066	0.30	-2.6
72,134	-		Sama_0066	0.30	-1.5
72,147	+		Sama_0066	0.32	-2.3
72,148	-		Sama_0066	0.32	-1.7
72,148	-		Sama_0066	0.32	+0.2
72,148	-		Sama_0066	0.32	+0.8
72,169	+		Sama_0066	0.34	-0.6
72,169	+		Sama_0066	0.34	+1.6
72,170	-		Sama_0066	0.34	+0.9
72,170	-		Sama_0066	0.34	-1.7
72,170	-		Sama_0066	0.34	-1.7
72,170	-		Sama_0066	0.34	-3.4
72,186	+		Sama_0066	0.36	+1.4
72,186	+		Sama_0066	0.36	-1.2
72,187	-		Sama_0066	0.36	+3.3
72,187	-		Sama_0066	0.36	+1.4
72,195	-		Sama_0066	0.37	-2.0
72,195	-		Sama_0066	0.37	-3.0
72,205	+		Sama_0066	0.38	+3.0
72,205	+		Sama_0066	0.38	+0.4
72,206	-		Sama_0066	0.38	+1.3
72,206	-		Sama_0066	0.38	-2.1
72,220	+		Sama_0066	0.40	-1.0
72,220	+		Sama_0066	0.40	-0.7
72,220	+		Sama_0066	0.40	+0.9
72,220	+		Sama_0066	0.40	+2.5
72,220	+		Sama_0066	0.40	-0.0
72,221	-		Sama_0066	0.40	-0.2
72,368	+		Sama_0066	0.55	-2.1
72,368	+		Sama_0066	0.55	-3.1
72,368	+		Sama_0066	0.55	+0.2
72,368	+		Sama_0066	0.55	+0.6
72,369	-		Sama_0066	0.55	-1.6
72,369	-		Sama_0066	0.55	-1.5
72,369	-		Sama_0066	0.55	-0.9
72,369	-		Sama_0066	0.55	-3.7
72,369	-		Sama_0066	0.55	-0.7
72,372	+		Sama_0066	0.56	-0.2
72,372	+		Sama_0066	0.56	-1.5
72,372	+		Sama_0066	0.56	+1.6
72,372	+		Sama_0066	0.56	-0.4
72,372	+		Sama_0066	0.56	+3.0
72,372	+		Sama_0066	0.56	+1.2
72,373	-		Sama_0066	0.56	+1.1
72,381	+		Sama_0066	0.56	+2.9
72,381	+		Sama_0066	0.56	+1.5
72,381	+		Sama_0066	0.56	+0.3
72,428	+		Sama_0066	0.61	+0.2
72,429	-		Sama_0066	0.62	+0.9
72,451	+		Sama_0066	0.64	+0.0
72,452	-		Sama_0066	0.64	-2.1
72,452	-		Sama_0066	0.64	-1.0
72,458	+		Sama_0066	0.65	-2.0
72,458	+		Sama_0066	0.65	-1.7
72,459	-		Sama_0066	0.65	-3.1
72,459	-		Sama_0066	0.65	+1.6
72,459	-		Sama_0066	0.65	+2.8
72,459	-		Sama_0066	0.65	-0.2
72,524	-		Sama_0066	0.72	-3.5
72,543	+		Sama_0066	0.74	+0.3
72,543	+		Sama_0066	0.74	-0.5
72,544	-		Sama_0066	0.74	-0.7
72,544	-		Sama_0066	0.74	-2.5
72,571	+		Sama_0066	0.76	-1.7
72,578	+		Sama_0066	0.77	+0.4
72,578	+		Sama_0066	0.77	+2.0
72,578	+		Sama_0066	0.77	-2.2
72,579	-		Sama_0066	0.77	+0.7
72,622	+		Sama_0066	0.82	-0.2
72,622	+		Sama_0066	0.82	+1.0
72,623	-		Sama_0066	0.82	+1.6
72,623	-		Sama_0066	0.82	-2.6
72,623	-		Sama_0066	0.82	-2.3
72,632	+		Sama_0066	0.83	-1.2
72,632	+		Sama_0066	0.83	+0.3
72,632	+		Sama_0066	0.83	+0.1
72,632	+		Sama_0066	0.83	-2.4
72,633	-		Sama_0066	0.83	-1.6
72,633	-		Sama_0066	0.83	+0.6
72,647	+		Sama_0066	0.84	+2.3
72,648	-		Sama_0066	0.85	+1.5
72,648	-		Sama_0066	0.85	-0.7
72,716	+				-1.5
72,716	+				-1.2
72,717	-				-2.7
72,717	-				-0.0
72,717	-				-0.7
72,717	-				-2.7
72,717	-				-1.5
72,717	-				+1.3
72,717	-				-1.2
72,717	-				-1.0
72,717	-				-0.3
72,721	+				+1.6
72,752	+				-0.2
72,753	-				-0.5
72,753	-				+1.1
72,761	+				-0.0
72,761	+				+1.2