Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1261.1

Experiment: R2A with Vogels_fungal_media 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1260.1 and Xcc-8004.1261.1 are separated by 262 nucleotidesXcc-8004.1261.1 and Xcc-8004.1262.1 overlap by 4 nucleotides Xcc-8004.1260.1: Xcc-8004.1260.1 - Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25), at 1,193,638 to 1,195,614 Xcc-8004.1260.1 Xcc-8004.1261.1: Xcc-8004.1261.1 - Membrane fusion protein of RND family multidrug efflux pump, at 1,195,877 to 1,196,962 Xcc-8004.1261.1 Xcc-8004.1262.1: Xcc-8004.1262.1 - RND multidrug efflux transporter; Acriflavin resistance protein, at 1,196,959 to 1,200,084 Xcc-8004.1262.1 Position (kb) 1195 1196 1197Strain fitness (log2 ratio) -2 -1 0 1at 1194.892 kb on + strand, within Xcc-8004.1260.1at 1194.893 kb on - strand, within Xcc-8004.1260.1at 1194.893 kb on - strand, within Xcc-8004.1260.1at 1194.934 kb on + strand, within Xcc-8004.1260.1at 1195.186 kb on + strand, within Xcc-8004.1260.1at 1195.187 kb on - strand, within Xcc-8004.1260.1at 1195.187 kb on - strand, within Xcc-8004.1260.1at 1195.459 kb on + strandat 1195.513 kb on + strandat 1195.514 kb on - strandat 1195.565 kb on + strandat 1195.565 kb on + strandat 1195.566 kb on - strandat 1195.566 kb on - strandat 1195.566 kb on - strandat 1195.566 kb on - strandat 1195.594 kb on + strandat 1195.595 kb on - strandat 1195.595 kb on - strandat 1195.595 kb on - strandat 1195.636 kb on + strandat 1195.684 kb on + strandat 1195.684 kb on + strandat 1195.684 kb on + strandat 1195.684 kb on + strandat 1195.684 kb on + strandat 1195.685 kb on - strandat 1195.692 kb on + strandat 1195.844 kb on + strandat 1195.845 kb on - strandat 1195.858 kb on - strandat 1195.858 kb on - strandat 1196.223 kb on - strand, within Xcc-8004.1261.1at 1196.456 kb on + strand, within Xcc-8004.1261.1at 1196.456 kb on + strand, within Xcc-8004.1261.1at 1196.456 kb on + strand, within Xcc-8004.1261.1at 1196.456 kb on + strand, within Xcc-8004.1261.1at 1196.456 kb on + strand, within Xcc-8004.1261.1at 1196.456 kb on + strand, within Xcc-8004.1261.1at 1196.456 kb on + strand, within Xcc-8004.1261.1at 1196.456 kb on + strand, within Xcc-8004.1261.1at 1196.456 kb on + strand, within Xcc-8004.1261.1at 1196.456 kb on + strand, within Xcc-8004.1261.1at 1196.457 kb on - strand, within Xcc-8004.1261.1at 1196.457 kb on - strand, within Xcc-8004.1261.1at 1196.457 kb on - strand, within Xcc-8004.1261.1at 1196.457 kb on - strand, within Xcc-8004.1261.1at 1196.457 kb on - strand, within Xcc-8004.1261.1at 1196.457 kb on - strand, within Xcc-8004.1261.1at 1196.457 kb on - strand, within Xcc-8004.1261.1at 1196.457 kb on - strand, within Xcc-8004.1261.1at 1196.457 kb on - strand, within Xcc-8004.1261.1at 1196.457 kb on - strand, within Xcc-8004.1261.1at 1196.741 kb on + strand, within Xcc-8004.1261.1at 1196.741 kb on + strand, within Xcc-8004.1261.1at 1196.741 kb on + strand, within Xcc-8004.1261.1at 1196.741 kb on + strand, within Xcc-8004.1261.1at 1196.741 kb on + strand, within Xcc-8004.1261.1at 1196.741 kb on + strand, within Xcc-8004.1261.1at 1196.741 kb on + strand, within Xcc-8004.1261.1at 1196.741 kb on + strand, within Xcc-8004.1261.1at 1196.741 kb on + strand, within Xcc-8004.1261.1at 1196.742 kb on - strand, within Xcc-8004.1261.1at 1196.742 kb on - strand, within Xcc-8004.1261.1at 1196.742 kb on - strand, within Xcc-8004.1261.1at 1196.742 kb on - strand, within Xcc-8004.1261.1at 1196.742 kb on - strand, within Xcc-8004.1261.1at 1197.109 kb on + strandat 1197.110 kb on - strandat 1197.110 kb on - strandat 1197.110 kb on - strandat 1197.436 kb on + strand, within Xcc-8004.1262.1at 1197.436 kb on + strand, within Xcc-8004.1262.1at 1197.658 kb on + strand, within Xcc-8004.1262.1at 1197.659 kb on - strand, within Xcc-8004.1262.1at 1197.712 kb on + strand, within Xcc-8004.1262.1at 1197.713 kb on - strand, within Xcc-8004.1262.1at 1197.845 kb on + strand, within Xcc-8004.1262.1at 1197.846 kb on - strand, within Xcc-8004.1262.1at 1197.846 kb on - strand, within Xcc-8004.1262.1at 1197.962 kb on - strand, within Xcc-8004.1262.1

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Vogels_fungal_media 0.2X
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1,194,892 + Xcc-8004.1260.1 0.63 -2.4
1,194,893 - Xcc-8004.1260.1 0.63 -1.0
1,194,893 - Xcc-8004.1260.1 0.63 +0.9
1,194,934 + Xcc-8004.1260.1 0.66 -2.6
1,195,186 + Xcc-8004.1260.1 0.78 -0.6
1,195,187 - Xcc-8004.1260.1 0.78 +0.5
1,195,187 - Xcc-8004.1260.1 0.78 +0.5
1,195,459 + -0.3
1,195,513 + -0.6
1,195,514 - -0.7
1,195,565 + +0.5
1,195,565 + +0.4
1,195,566 - -0.9
1,195,566 - -0.4
1,195,566 - +0.1
1,195,566 - -0.5
1,195,594 + +0.6
1,195,595 - +0.8
1,195,595 - +1.4
1,195,595 - -0.2
1,195,636 + +0.7
1,195,684 + +0.9
1,195,684 + +0.3
1,195,684 + -0.5
1,195,684 + -0.5
1,195,684 + -0.3
1,195,685 - -0.1
1,195,692 + +0.0
1,195,844 + -0.6
1,195,845 - -1.6
1,195,858 - +0.3
1,195,858 - +0.8
1,196,223 - Xcc-8004.1261.1 0.32 +0.5
1,196,456 + Xcc-8004.1261.1 0.53 -0.5
1,196,456 + Xcc-8004.1261.1 0.53 -0.6
1,196,456 + Xcc-8004.1261.1 0.53 -0.1
1,196,456 + Xcc-8004.1261.1 0.53 -0.2
1,196,456 + Xcc-8004.1261.1 0.53 +1.0
1,196,456 + Xcc-8004.1261.1 0.53 -2.3
1,196,456 + Xcc-8004.1261.1 0.53 -0.5
1,196,456 + Xcc-8004.1261.1 0.53 -0.4
1,196,456 + Xcc-8004.1261.1 0.53 -0.3
1,196,456 + Xcc-8004.1261.1 0.53 -1.5
1,196,457 - Xcc-8004.1261.1 0.53 -0.3
1,196,457 - Xcc-8004.1261.1 0.53 +0.4
1,196,457 - Xcc-8004.1261.1 0.53 -0.3
1,196,457 - Xcc-8004.1261.1 0.53 -0.2
1,196,457 - Xcc-8004.1261.1 0.53 -0.0
1,196,457 - Xcc-8004.1261.1 0.53 -0.8
1,196,457 - Xcc-8004.1261.1 0.53 -1.4
1,196,457 - Xcc-8004.1261.1 0.53 -0.0
1,196,457 - Xcc-8004.1261.1 0.53 -0.8
1,196,457 - Xcc-8004.1261.1 0.53 +1.0
1,196,741 + Xcc-8004.1261.1 0.80 -1.3
1,196,741 + Xcc-8004.1261.1 0.80 -0.3
1,196,741 + Xcc-8004.1261.1 0.80 -1.3
1,196,741 + Xcc-8004.1261.1 0.80 -0.5
1,196,741 + Xcc-8004.1261.1 0.80 +1.0
1,196,741 + Xcc-8004.1261.1 0.80 +1.0
1,196,741 + Xcc-8004.1261.1 0.80 -1.0
1,196,741 + Xcc-8004.1261.1 0.80 -0.0
1,196,741 + Xcc-8004.1261.1 0.80 +0.0
1,196,742 - Xcc-8004.1261.1 0.80 -0.6
1,196,742 - Xcc-8004.1261.1 0.80 -1.1
1,196,742 - Xcc-8004.1261.1 0.80 +0.5
1,196,742 - Xcc-8004.1261.1 0.80 +0.7
1,196,742 - Xcc-8004.1261.1 0.80 -0.6
1,197,109 + +1.3
1,197,110 - -0.8
1,197,110 - +0.9
1,197,110 - -0.9
1,197,436 + Xcc-8004.1262.1 0.15 -0.2
1,197,436 + Xcc-8004.1262.1 0.15 +0.3
1,197,658 + Xcc-8004.1262.1 0.22 -0.5
1,197,659 - Xcc-8004.1262.1 0.22 -1.1
1,197,712 + Xcc-8004.1262.1 0.24 -1.0
1,197,713 - Xcc-8004.1262.1 0.24 -2.0
1,197,845 + Xcc-8004.1262.1 0.28 -1.0
1,197,846 - Xcc-8004.1262.1 0.28 -1.0
1,197,846 - Xcc-8004.1262.1 0.28 -0.2
1,197,962 - Xcc-8004.1262.1 0.32 +0.5

Or see this region's nucleotide sequence