Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS19935

Experiment: Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Sap; Sample=Stem; Collection=Plant_fluid_from_centrifuged_stems

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS19930 and RS_RS26165 are separated by 204 nucleotidesRS_RS26165 and RS_RS19935 are separated by 255 nucleotidesRS_RS19935 and RS_RS19940 are separated by 77 nucleotides RS_RS19930: RS_RS19930 - DUF2147 domain-containing protein, at 722,584 to 723,054 _RS19930 RS_RS26165: RS_RS26165 - hypothetical protein, at 723,259 to 723,366 _RS26165 RS_RS19935: RS_RS19935 - oxidoreductase, at 723,622 to 724,452 _RS19935 RS_RS19940: RS_RS19940 - AraC family transcriptional regulator, at 724,530 to 725,549 _RS19940 Position (kb) 723 724 725Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 722.687 kb on + strand, within RS_RS19930at 722.687 kb on + strand, within RS_RS19930at 722.687 kb on + strand, within RS_RS19930at 722.687 kb on + strand, within RS_RS19930at 722.687 kb on + strand, within RS_RS19930at 722.688 kb on - strand, within RS_RS19930at 722.688 kb on - strand, within RS_RS19930at 722.688 kb on - strand, within RS_RS19930at 722.688 kb on - strand, within RS_RS19930at 722.711 kb on + strand, within RS_RS19930at 722.711 kb on + strand, within RS_RS19930at 722.712 kb on - strand, within RS_RS19930at 722.861 kb on + strand, within RS_RS19930at 722.861 kb on + strand, within RS_RS19930at 722.897 kb on + strand, within RS_RS19930at 722.897 kb on + strand, within RS_RS19930at 722.897 kb on + strand, within RS_RS19930at 722.897 kb on + strand, within RS_RS19930at 722.897 kb on + strand, within RS_RS19930at 722.897 kb on + strand, within RS_RS19930at 722.897 kb on + strand, within RS_RS19930at 722.898 kb on - strand, within RS_RS19930at 722.898 kb on - strand, within RS_RS19930at 722.898 kb on - strand, within RS_RS19930at 722.898 kb on - strand, within RS_RS19930at 722.980 kb on + strand, within RS_RS19930at 722.981 kb on - strand, within RS_RS19930at 722.981 kb on - strand, within RS_RS19930at 723.000 kb on + strand, within RS_RS19930at 723.000 kb on + strand, within RS_RS19930at 723.034 kb on + strandat 723.035 kb on - strandat 723.035 kb on - strandat 723.035 kb on - strandat 723.035 kb on - strandat 723.035 kb on - strandat 723.035 kb on - strandat 723.037 kb on + strandat 723.038 kb on - strandat 723.070 kb on + strandat 723.071 kb on - strandat 723.088 kb on - strandat 723.088 kb on - strandat 723.129 kb on + strandat 723.129 kb on + strandat 723.129 kb on + strandat 723.129 kb on + strandat 723.129 kb on + strandat 723.216 kb on + strandat 723.216 kb on + strandat 723.217 kb on - strandat 723.305 kb on + strand, within RS_RS26165at 723.306 kb on - strand, within RS_RS26165at 723.367 kb on + strandat 723.367 kb on + strandat 723.368 kb on - strandat 723.368 kb on - strandat 723.368 kb on - strandat 723.368 kb on - strandat 723.368 kb on - strandat 723.461 kb on + strandat 723.461 kb on + strandat 723.468 kb on + strandat 723.520 kb on + strandat 723.520 kb on + strandat 723.520 kb on + strandat 723.520 kb on + strandat 723.520 kb on + strandat 723.520 kb on + strandat 723.521 kb on - strandat 723.521 kb on - strandat 723.521 kb on - strandat 723.521 kb on - strandat 723.521 kb on - strandat 723.521 kb on - strandat 723.521 kb on - strandat 723.585 kb on + strandat 723.586 kb on - strandat 723.586 kb on - strandat 723.721 kb on + strand, within RS_RS19935at 723.721 kb on + strand, within RS_RS19935at 723.721 kb on + strand, within RS_RS19935at 723.721 kb on + strand, within RS_RS19935at 723.721 kb on + strand, within RS_RS19935at 723.721 kb on + strand, within RS_RS19935at 723.722 kb on - strand, within RS_RS19935at 723.722 kb on - strand, within RS_RS19935at 723.776 kb on + strand, within RS_RS19935at 723.776 kb on + strand, within RS_RS19935at 723.776 kb on + strand, within RS_RS19935at 723.776 kb on + strand, within RS_RS19935at 723.845 kb on + strand, within RS_RS19935at 723.846 kb on - strand, within RS_RS19935at 723.846 kb on - strand, within RS_RS19935at 723.846 kb on - strand, within RS_RS19935at 723.889 kb on + strand, within RS_RS19935at 723.889 kb on + strand, within RS_RS19935at 723.889 kb on + strand, within RS_RS19935at 723.889 kb on + strand, within RS_RS19935at 723.889 kb on + strand, within RS_RS19935at 723.889 kb on + strand, within RS_RS19935at 723.889 kb on + strand, within RS_RS19935at 723.890 kb on - strand, within RS_RS19935at 723.890 kb on - strand, within RS_RS19935at 723.929 kb on - strand, within RS_RS19935at 723.929 kb on - strand, within RS_RS19935at 724.045 kb on + strand, within RS_RS19935at 724.046 kb on - strand, within RS_RS19935at 724.066 kb on + strand, within RS_RS19935at 724.067 kb on - strand, within RS_RS19935at 724.067 kb on - strand, within RS_RS19935at 724.067 kb on - strand, within RS_RS19935at 724.134 kb on + strand, within RS_RS19935at 724.135 kb on - strand, within RS_RS19935at 724.229 kb on - strand, within RS_RS19935at 724.273 kb on + strand, within RS_RS19935at 724.274 kb on - strand, within RS_RS19935at 724.274 kb on - strand, within RS_RS19935at 724.315 kb on - strand, within RS_RS19935at 724.315 kb on - strand, within RS_RS19935at 724.358 kb on - strand, within RS_RS19935at 724.372 kb on + strandat 724.373 kb on - strandat 724.482 kb on + strandat 724.482 kb on + strandat 724.482 kb on + strandat 724.483 kb on - strandat 724.483 kb on - strandat 724.483 kb on - strandat 724.557 kb on - strandat 724.557 kb on - strandat 724.557 kb on - strandat 724.557 kb on - strandat 724.581 kb on - strandat 724.581 kb on - strandat 724.684 kb on - strand, within RS_RS19940at 724.684 kb on - strand, within RS_RS19940at 724.684 kb on - strand, within RS_RS19940at 724.684 kb on - strand, within RS_RS19940at 724.684 kb on - strand, within RS_RS19940at 724.744 kb on + strand, within RS_RS19940at 724.745 kb on - strand, within RS_RS19940at 724.745 kb on - strand, within RS_RS19940at 724.760 kb on + strand, within RS_RS19940at 724.809 kb on + strand, within RS_RS19940at 724.810 kb on - strand, within RS_RS19940at 724.874 kb on + strand, within RS_RS19940at 724.915 kb on + strand, within RS_RS19940at 724.917 kb on + strand, within RS_RS19940at 724.917 kb on + strand, within RS_RS19940at 724.917 kb on + strand, within RS_RS19940at 724.918 kb on - strand, within RS_RS19940at 724.918 kb on - strand, within RS_RS19940at 724.918 kb on - strand, within RS_RS19940at 724.918 kb on - strand, within RS_RS19940at 724.918 kb on - strand, within RS_RS19940at 725.029 kb on + strand, within RS_RS19940at 725.029 kb on + strand, within RS_RS19940at 725.029 kb on + strand, within RS_RS19940at 725.029 kb on + strand, within RS_RS19940at 725.029 kb on + strand, within RS_RS19940at 725.029 kb on + strand, within RS_RS19940at 725.029 kb on + strand, within RS_RS19940at 725.030 kb on - strand, within RS_RS19940at 725.030 kb on - strand, within RS_RS19940at 725.030 kb on - strand, within RS_RS19940at 725.030 kb on - strand, within RS_RS19940at 725.030 kb on - strand, within RS_RS19940at 725.064 kb on + strand, within RS_RS19940at 725.216 kb on + strand, within RS_RS19940at 725.217 kb on - strand, within RS_RS19940at 725.217 kb on - strand, within RS_RS19940at 725.217 kb on - strand, within RS_RS19940at 725.318 kb on + strand, within RS_RS19940at 725.318 kb on + strand, within RS_RS19940at 725.318 kb on + strand, within RS_RS19940at 725.319 kb on - strand, within RS_RS19940at 725.323 kb on + strand, within RS_RS19940at 725.324 kb on - strand, within RS_RS19940at 725.324 kb on - strand, within RS_RS19940at 725.324 kb on - strand, within RS_RS19940at 725.324 kb on - strand, within RS_RS19940at 725.324 kb on - strand, within RS_RS19940at 725.451 kb on + strandat 725.451 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Sap; Sample=Stem; Collection=Plant_fluid_from_centrifuged_stems
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722,687 + RS_RS19930 0.22 +2.6
722,687 + RS_RS19930 0.22 +0.9
722,687 + RS_RS19930 0.22 -0.3
722,687 + RS_RS19930 0.22 -0.9
722,687 + RS_RS19930 0.22 -0.4
722,688 - RS_RS19930 0.22 -1.5
722,688 - RS_RS19930 0.22 +0.4
722,688 - RS_RS19930 0.22 +0.0
722,688 - RS_RS19930 0.22 -1.3
722,711 + RS_RS19930 0.27 -0.2
722,711 + RS_RS19930 0.27 -0.3
722,712 - RS_RS19930 0.27 -1.0
722,861 + RS_RS19930 0.59 -2.0
722,861 + RS_RS19930 0.59 -0.1
722,897 + RS_RS19930 0.66 +0.1
722,897 + RS_RS19930 0.66 +3.0
722,897 + RS_RS19930 0.66 -0.0
722,897 + RS_RS19930 0.66 +0.8
722,897 + RS_RS19930 0.66 +0.4
722,897 + RS_RS19930 0.66 -2.0
722,897 + RS_RS19930 0.66 -1.2
722,898 - RS_RS19930 0.67 -0.5
722,898 - RS_RS19930 0.67 +2.0
722,898 - RS_RS19930 0.67 -0.4
722,898 - RS_RS19930 0.67 -2.2
722,980 + RS_RS19930 0.84 -0.4
722,981 - RS_RS19930 0.84 +0.1
722,981 - RS_RS19930 0.84 -0.3
723,000 + RS_RS19930 0.88 +1.3
723,000 + RS_RS19930 0.88 +0.3
723,034 + -0.2
723,035 - -1.5
723,035 - -2.3
723,035 - -1.5
723,035 - -0.4
723,035 - -0.0
723,035 - -1.2
723,037 + -0.4
723,038 - +0.6
723,070 + -0.5
723,071 - +1.3
723,088 - +0.3
723,088 - +0.0
723,129 + -0.6
723,129 + -1.5
723,129 + +0.4
723,129 + -1.1
723,129 + +0.9
723,216 + +2.1
723,216 + +0.3
723,217 - +1.5
723,305 + RS_RS26165 0.43 +0.3
723,306 - RS_RS26165 0.44 +0.1
723,367 + -1.3
723,367 + -1.2
723,368 - -0.3
723,368 - +0.7
723,368 - +0.8
723,368 - -1.4
723,368 - -1.8
723,461 + +1.8
723,461 + +2.0
723,468 + +0.1
723,520 + +1.2
723,520 + +0.5
723,520 + -0.7
723,520 + +0.4
723,520 + +1.0
723,520 + +1.1
723,521 - -1.0
723,521 - +0.4
723,521 - +0.3
723,521 - -0.5
723,521 - +1.1
723,521 - -3.0
723,521 - -1.7
723,585 + -0.6
723,586 - -3.8
723,586 - +1.2
723,721 + RS_RS19935 0.12 +0.3
723,721 + RS_RS19935 0.12 +0.4
723,721 + RS_RS19935 0.12 +0.4
723,721 + RS_RS19935 0.12 +1.8
723,721 + RS_RS19935 0.12 -0.8
723,721 + RS_RS19935 0.12 +0.3
723,722 - RS_RS19935 0.12 +0.9
723,722 - RS_RS19935 0.12 -0.5
723,776 + RS_RS19935 0.19 +0.3
723,776 + RS_RS19935 0.19 -0.0
723,776 + RS_RS19935 0.19 -1.6
723,776 + RS_RS19935 0.19 +0.3
723,845 + RS_RS19935 0.27 -0.3
723,846 - RS_RS19935 0.27 +0.7
723,846 - RS_RS19935 0.27 +0.4
723,846 - RS_RS19935 0.27 -0.7
723,889 + RS_RS19935 0.32 -0.4
723,889 + RS_RS19935 0.32 -0.9
723,889 + RS_RS19935 0.32 -0.6
723,889 + RS_RS19935 0.32 -0.5
723,889 + RS_RS19935 0.32 -0.5
723,889 + RS_RS19935 0.32 -1.2
723,889 + RS_RS19935 0.32 -4.6
723,890 - RS_RS19935 0.32 +1.2
723,890 - RS_RS19935 0.32 +0.0
723,929 - RS_RS19935 0.37 -1.3
723,929 - RS_RS19935 0.37 +1.4
724,045 + RS_RS19935 0.51 -0.3
724,046 - RS_RS19935 0.51 +0.2
724,066 + RS_RS19935 0.53 -0.3
724,067 - RS_RS19935 0.54 -1.0
724,067 - RS_RS19935 0.54 -2.4
724,067 - RS_RS19935 0.54 +0.2
724,134 + RS_RS19935 0.62 +0.7
724,135 - RS_RS19935 0.62 +1.2
724,229 - RS_RS19935 0.73 +0.7
724,273 + RS_RS19935 0.78 -0.5
724,274 - RS_RS19935 0.78 +1.1
724,274 - RS_RS19935 0.78 +0.3
724,315 - RS_RS19935 0.83 -0.4
724,315 - RS_RS19935 0.83 -3.0
724,358 - RS_RS19935 0.89 +1.3
724,372 + +0.6
724,373 - +0.9
724,482 + +0.5
724,482 + -0.6
724,482 + -0.2
724,483 - -0.2
724,483 - +0.5
724,483 - +1.3
724,557 - -0.2
724,557 - -0.3
724,557 - +0.1
724,557 - -2.2
724,581 - +0.9
724,581 - +0.3
724,684 - RS_RS19940 0.15 -0.6
724,684 - RS_RS19940 0.15 +0.3
724,684 - RS_RS19940 0.15 +0.5
724,684 - RS_RS19940 0.15 +0.7
724,684 - RS_RS19940 0.15 +1.1
724,744 + RS_RS19940 0.21 +0.1
724,745 - RS_RS19940 0.21 -1.9
724,745 - RS_RS19940 0.21 -0.8
724,760 + RS_RS19940 0.23 +0.6
724,809 + RS_RS19940 0.27 +0.2
724,810 - RS_RS19940 0.27 +0.4
724,874 + RS_RS19940 0.34 -1.2
724,915 + RS_RS19940 0.38 -0.7
724,917 + RS_RS19940 0.38 -1.7
724,917 + RS_RS19940 0.38 +0.4
724,917 + RS_RS19940 0.38 +0.4
724,918 - RS_RS19940 0.38 -1.3
724,918 - RS_RS19940 0.38 -0.6
724,918 - RS_RS19940 0.38 -0.4
724,918 - RS_RS19940 0.38 -1.7
724,918 - RS_RS19940 0.38 +0.0
725,029 + RS_RS19940 0.49 +0.4
725,029 + RS_RS19940 0.49 -1.3
725,029 + RS_RS19940 0.49 +0.4
725,029 + RS_RS19940 0.49 +0.5
725,029 + RS_RS19940 0.49 +0.7
725,029 + RS_RS19940 0.49 +1.3
725,029 + RS_RS19940 0.49 -0.5
725,030 - RS_RS19940 0.49 -2.2
725,030 - RS_RS19940 0.49 -1.1
725,030 - RS_RS19940 0.49 +0.5
725,030 - RS_RS19940 0.49 +1.0
725,030 - RS_RS19940 0.49 -0.9
725,064 + RS_RS19940 0.52 -1.8
725,216 + RS_RS19940 0.67 -2.8
725,217 - RS_RS19940 0.67 -0.4
725,217 - RS_RS19940 0.67 -1.2
725,217 - RS_RS19940 0.67 +0.3
725,318 + RS_RS19940 0.77 -0.8
725,318 + RS_RS19940 0.77 -1.9
725,318 + RS_RS19940 0.77 -1.4
725,319 - RS_RS19940 0.77 +0.7
725,323 + RS_RS19940 0.78 -0.3
725,324 - RS_RS19940 0.78 -0.4
725,324 - RS_RS19940 0.78 -0.6
725,324 - RS_RS19940 0.78 +0.6
725,324 - RS_RS19940 0.78 -1.4
725,324 - RS_RS19940 0.78 +1.4
725,451 + +0.8
725,451 + +0.9

Or see this region's nucleotide sequence