Experiment: Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Sap; Sample=Stem; Collection=Plant_fluid_from_centrifuged_stems
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS18545 and RS_RS18550 overlap by 4 nucleotides RS_RS18550 and RS_RS18555 are separated by 44 nucleotides
RS_RS18545: RS_RS18545 - poly-beta-1,6 N-acetyl-D-glucosamine synthase, at 374,519 to 375,793
_RS18545
RS_RS18550: RS_RS18550 - hypothetical protein, at 375,790 to 376,779
_RS18550
RS_RS18555: RS_RS18555 - TolC family protein, at 376,824 to 378,308
_RS18555
Position (kb) 375
376
377 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 375.131 kb on + strand, within RS_RS18545 at 375.131 kb on + strand, within RS_RS18545 at 375.131 kb on + strand, within RS_RS18545 at 375.132 kb on - strand, within RS_RS18545 at 375.201 kb on - strand, within RS_RS18545 at 375.329 kb on + strand, within RS_RS18545 at 375.330 kb on - strand, within RS_RS18545 at 375.330 kb on - strand, within RS_RS18545 at 375.380 kb on + strand, within RS_RS18545 at 375.462 kb on - strand, within RS_RS18545 at 375.638 kb on + strand, within RS_RS18545 at 375.771 kb on + strand at 375.771 kb on + strand at 375.771 kb on + strand at 375.772 kb on - strand at 375.772 kb on - strand at 375.772 kb on - strand at 375.772 kb on - strand at 375.772 kb on - strand at 375.801 kb on - strand at 375.937 kb on + strand, within RS_RS18550 at 375.937 kb on + strand, within RS_RS18550 at 375.938 kb on - strand, within RS_RS18550 at 375.938 kb on - strand, within RS_RS18550 at 375.938 kb on - strand, within RS_RS18550 at 375.938 kb on - strand, within RS_RS18550 at 375.938 kb on - strand, within RS_RS18550 at 376.001 kb on - strand, within RS_RS18550 at 376.585 kb on + strand, within RS_RS18550 at 376.585 kb on + strand, within RS_RS18550 at 377.182 kb on + strand, within RS_RS18555 at 377.183 kb on - strand, within RS_RS18555 at 377.183 kb on - strand, within RS_RS18555 at 377.183 kb on - strand, within RS_RS18555 at 377.287 kb on + strand, within RS_RS18555 at 377.719 kb on + strand, within RS_RS18555
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Sap; Sample=Stem; Collection=Plant_fluid_from_centrifuged_stems remove 375,131 + RS_RS18545 0.48 -0.3 375,131 + RS_RS18545 0.48 -0.4 375,131 + RS_RS18545 0.48 +0.1 375,132 - RS_RS18545 0.48 +1.3 375,201 - RS_RS18545 0.53 -0.6 375,329 + RS_RS18545 0.64 -2.9 375,330 - RS_RS18545 0.64 +1.0 375,330 - RS_RS18545 0.64 -0.5 375,380 + RS_RS18545 0.68 +0.5 375,462 - RS_RS18545 0.74 +0.2 375,638 + RS_RS18545 0.88 +0.1 375,771 + -0.2 375,771 + +1.0 375,771 + -0.1 375,772 - -1.5 375,772 - +0.3 375,772 - -0.2 375,772 - -1.9 375,772 - +1.3 375,801 - +0.9 375,937 + RS_RS18550 0.15 -0.5 375,937 + RS_RS18550 0.15 +0.5 375,938 - RS_RS18550 0.15 -0.4 375,938 - RS_RS18550 0.15 -0.1 375,938 - RS_RS18550 0.15 -0.2 375,938 - RS_RS18550 0.15 +0.6 375,938 - RS_RS18550 0.15 +0.7 376,001 - RS_RS18550 0.21 +0.3 376,585 + RS_RS18550 0.80 -2.9 376,585 + RS_RS18550 0.80 +0.6 377,182 + RS_RS18555 0.24 +0.1 377,183 - RS_RS18555 0.24 +0.9 377,183 - RS_RS18555 0.24 -0.0 377,183 - RS_RS18555 0.24 -0.1 377,287 + RS_RS18555 0.31 -1.4 377,719 + RS_RS18555 0.60 +1.0
Or see this region's nucleotide sequence