Experiment: Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Sap; Sample=Stem; Collection=Plant_fluid_from_centrifuged_stems
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS17460 and RS_RS17465 are separated by 30 nucleotides RS_RS17465 and RS_RS17470 are separated by 138 nucleotides RS_RS17470 and RS_RS17475 are separated by 60 nucleotides
RS_RS17460: RS_RS17460 - serine hydroxymethyltransferase, at 62,005 to 63,279
_RS17460
RS_RS17465: RS_RS17465 - membrane dipeptidase, at 63,310 to 64,281
_RS17465
RS_RS17470: RS_RS17470 - 4-vinyl reductase, at 64,420 to 64,953
_RS17470
RS_RS17475: RS_RS17475 - FAD-dependent oxidoreductase, at 65,014 to 67,077
_RS17475
Position (kb) 63
64
65 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 62.427 kb on + strand, within RS_RS17460 at 62.428 kb on - strand, within RS_RS17460 at 62.449 kb on + strand, within RS_RS17460 at 62.450 kb on - strand, within RS_RS17460 at 62.450 kb on - strand, within RS_RS17460 at 62.874 kb on + strand, within RS_RS17460 at 63.613 kb on + strand, within RS_RS17465 at 63.662 kb on - strand, within RS_RS17465 at 63.662 kb on - strand, within RS_RS17465 at 63.739 kb on - strand, within RS_RS17465 at 64.003 kb on + strand, within RS_RS17465 at 64.004 kb on - strand, within RS_RS17465 at 64.280 kb on - strand at 64.493 kb on - strand, within RS_RS17470 at 64.493 kb on - strand, within RS_RS17470 at 64.493 kb on - strand, within RS_RS17470 at 64.559 kb on - strand, within RS_RS17470 at 64.574 kb on - strand, within RS_RS17470 at 64.597 kb on + strand, within RS_RS17470 at 64.661 kb on - strand, within RS_RS17470 at 64.799 kb on - strand, within RS_RS17470 at 65.035 kb on - strand at 65.101 kb on + strand at 65.101 kb on - strand at 65.102 kb on - strand at 65.102 kb on - strand at 65.134 kb on + strand at 65.134 kb on + strand at 65.146 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Sap; Sample=Stem; Collection=Plant_fluid_from_centrifuged_stems remove 62,427 + RS_RS17460 0.33 -0.8 62,428 - RS_RS17460 0.33 -0.8 62,449 + RS_RS17460 0.35 -0.9 62,450 - RS_RS17460 0.35 -1.0 62,450 - RS_RS17460 0.35 -5.3 62,874 + RS_RS17460 0.68 +1.0 63,613 + RS_RS17465 0.31 +0.1 63,662 - RS_RS17465 0.36 -2.0 63,662 - RS_RS17465 0.36 +1.1 63,739 - RS_RS17465 0.44 -1.4 64,003 + RS_RS17465 0.71 +0.2 64,004 - RS_RS17465 0.71 -0.0 64,280 - +0.5 64,493 - RS_RS17470 0.14 -0.4 64,493 - RS_RS17470 0.14 +0.2 64,493 - RS_RS17470 0.14 +0.6 64,559 - RS_RS17470 0.26 -1.1 64,574 - RS_RS17470 0.29 +1.0 64,597 + RS_RS17470 0.33 +2.0 64,661 - RS_RS17470 0.45 -1.4 64,799 - RS_RS17470 0.71 +2.0 65,035 - +0.4 65,101 + +0.2 65,101 - -1.2 65,102 - -0.8 65,102 - -1.0 65,134 + +1.3 65,134 + -0.2 65,146 + -0.5
Or see this region's nucleotide sequence