Experiment: Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Sap; Sample=Stem; Collection=Plant_fluid_from_centrifuged_stems
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS17235 and RS_RS17240 overlap by 8 nucleotides RS_RS17240 and RS_RS17245 are separated by 5 nucleotides RS_RS17245 and RS_RS17250 are separated by 170 nucleotides
RS_RS17235: RS_RS17235 - sensor histidine kinase, at 9,387 to 11,294
_RS17235
RS_RS17240: RS_RS17240 - sigma-54-dependent Fis family transcriptional regulator, at 11,287 to 12,651
_RS17240
RS_RS17245: RS_RS17245 - YhfC family intramembrane metalloprotease, at 12,657 to 13,454
_RS17245
RS_RS17250: RS_RS17250 - hypothetical protein, at 13,625 to 14,056
_RS17250
Position (kb) 11
12
13 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 12.019 kb on + strand, within RS_RS17240 at 12.020 kb on - strand, within RS_RS17240 at 12.223 kb on + strand, within RS_RS17240 at 12.224 kb on - strand, within RS_RS17240 at 12.224 kb on - strand, within RS_RS17240 at 12.224 kb on - strand, within RS_RS17240 at 12.227 kb on - strand, within RS_RS17240 at 12.598 kb on + strand at 12.599 kb on - strand at 12.599 kb on - strand at 12.599 kb on - strand at 12.739 kb on + strand, within RS_RS17245 at 12.740 kb on - strand, within RS_RS17245 at 12.740 kb on - strand, within RS_RS17245 at 12.740 kb on - strand, within RS_RS17245 at 12.740 kb on - strand, within RS_RS17245 at 12.867 kb on + strand, within RS_RS17245 at 12.868 kb on - strand, within RS_RS17245 at 12.868 kb on - strand, within RS_RS17245 at 13.111 kb on + strand, within RS_RS17245 at 13.112 kb on - strand, within RS_RS17245 at 13.112 kb on - strand, within RS_RS17245 at 13.210 kb on + strand, within RS_RS17245 at 13.211 kb on - strand, within RS_RS17245 at 13.211 kb on - strand, within RS_RS17245 at 13.273 kb on + strand, within RS_RS17245 at 13.273 kb on + strand, within RS_RS17245 at 13.486 kb on - strand at 13.570 kb on + strand at 13.571 kb on - strand at 13.575 kb on + strand at 13.575 kb on + strand at 13.575 kb on + strand at 13.576 kb on - strand at 13.576 kb on - strand at 13.576 kb on - strand at 13.576 kb on - strand at 13.576 kb on - strand at 13.576 kb on - strand at 13.576 kb on - strand at 13.577 kb on + strand at 13.578 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Sap; Sample=Stem; Collection=Plant_fluid_from_centrifuged_stems remove 12,019 + RS_RS17240 0.54 +0.4 12,020 - RS_RS17240 0.54 -0.7 12,223 + RS_RS17240 0.69 -1.6 12,224 - RS_RS17240 0.69 -3.4 12,224 - RS_RS17240 0.69 +0.9 12,224 - RS_RS17240 0.69 +0.9 12,227 - RS_RS17240 0.69 -1.7 12,598 + -0.5 12,599 - +1.0 12,599 - -0.4 12,599 - +1.1 12,739 + RS_RS17245 0.10 +0.8 12,740 - RS_RS17245 0.10 -1.3 12,740 - RS_RS17245 0.10 +0.3 12,740 - RS_RS17245 0.10 +1.3 12,740 - RS_RS17245 0.10 +0.2 12,867 + RS_RS17245 0.26 +1.1 12,868 - RS_RS17245 0.26 +0.1 12,868 - RS_RS17245 0.26 -0.4 13,111 + RS_RS17245 0.57 +0.3 13,112 - RS_RS17245 0.57 +0.5 13,112 - RS_RS17245 0.57 -0.2 13,210 + RS_RS17245 0.69 -2.2 13,211 - RS_RS17245 0.69 -0.5 13,211 - RS_RS17245 0.69 -0.2 13,273 + RS_RS17245 0.77 +0.1 13,273 + RS_RS17245 0.77 +1.5 13,486 - +0.3 13,570 + -0.4 13,571 - +0.6 13,575 + +0.4 13,575 + -0.4 13,575 + +0.1 13,576 - +0.1 13,576 - -0.3 13,576 - +0.3 13,576 - +0.8 13,576 - -1.5 13,576 - -1.0 13,576 - -0.7 13,577 + -0.5 13,578 - +0.3
Or see this region's nucleotide sequence