Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS16630

Experiment: Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Sap; Sample=Stem; Collection=Plant_fluid_from_centrifuged_stems

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS16620 and RS_RS16625 are separated by 36 nucleotidesRS_RS16625 and RS_RS16630 are separated by 64 nucleotidesRS_RS16630 and RS_RS16635 are separated by 72 nucleotidesRS_RS16635 and RS_RS16640 are separated by 2 nucleotides RS_RS16620: RS_RS16620 - ATP synthase subunit beta, at 3,579,965 to 3,581,368 _RS16620 RS_RS16625: RS_RS16625 - ATP synthase subunit gamma, at 3,581,405 to 3,582,280 _RS16625 RS_RS16630: RS_RS16630 - ATP synthase subunit alpha, at 3,582,345 to 3,583,886 _RS16630 RS_RS16635: RS_RS16635 - ATP synthase subunit delta, at 3,583,959 to 3,584,495 _RS16635 RS_RS16640: RS_RS16640 - ATP synthase subunit b 1, at 3,584,498 to 3,584,968 _RS16640 Position (kb) 3582 3583 3584Strain fitness (log2 ratio) -1 0 1at 3581.382 kb on - strandat 3581.382 kb on - strandat 3581.387 kb on - strandat 3581.387 kb on - strandat 3583.961 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Sap; Sample=Stem; Collection=Plant_fluid_from_centrifuged_stems
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3,581,382 - +0.5
3,581,382 - +0.1
3,581,387 - -1.1
3,581,387 - +1.4
3,583,961 - +0.3

Or see this region's nucleotide sequence