Experiment: Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Sap; Sample=Stem; Collection=Plant_fluid_from_centrifuged_stems
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS03855 and RS_RS03860 are separated by 4 nucleotides RS_RS03860 and RS_RS03865 are separated by 193 nucleotides
RS_RS03855: RS_RS03855 - DUF72 domain-containing protein, at 806,954 to 808,021
_RS03855
RS_RS03860: RS_RS03860 - class I SAM-dependent methyltransferase, at 808,026 to 809,246
_RS03860
RS_RS03865: RS_RS03865 - Pyridoxine/pyridoxamine 5'-phosphate oxidase 1, at 809,440 to 810,078
_RS03865
Position (kb) 808
809
810 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 807.292 kb on - strand, within RS_RS03855 at 807.675 kb on + strand, within RS_RS03855 at 807.685 kb on - strand, within RS_RS03855 at 807.708 kb on + strand, within RS_RS03855 at 807.708 kb on + strand, within RS_RS03855 at 807.708 kb on + strand, within RS_RS03855 at 807.709 kb on - strand, within RS_RS03855 at 807.709 kb on - strand, within RS_RS03855 at 807.709 kb on - strand, within RS_RS03855 at 807.709 kb on - strand, within RS_RS03855 at 807.831 kb on + strand, within RS_RS03855 at 808.033 kb on + strand at 808.033 kb on + strand at 808.033 kb on + strand at 808.037 kb on + strand at 808.037 kb on + strand at 808.038 kb on - strand at 808.038 kb on - strand at 808.038 kb on - strand at 808.038 kb on - strand at 808.038 kb on - strand at 808.038 kb on - strand at 808.039 kb on + strand at 808.039 kb on + strand at 808.040 kb on - strand at 808.041 kb on - strand at 808.246 kb on + strand, within RS_RS03860 at 808.348 kb on + strand, within RS_RS03860 at 808.348 kb on + strand, within RS_RS03860 at 808.808 kb on - strand, within RS_RS03860 at 808.808 kb on - strand, within RS_RS03860 at 808.808 kb on - strand, within RS_RS03860 at 808.819 kb on + strand, within RS_RS03860 at 808.820 kb on - strand, within RS_RS03860 at 808.849 kb on + strand, within RS_RS03860 at 808.850 kb on - strand, within RS_RS03860 at 809.312 kb on + strand at 809.313 kb on - strand at 809.381 kb on + strand at 809.381 kb on + strand at 809.382 kb on - strand at 809.489 kb on + strand at 809.709 kb on - strand, within RS_RS03865 at 809.711 kb on + strand, within RS_RS03865 at 809.711 kb on + strand, within RS_RS03865 at 809.712 kb on - strand, within RS_RS03865 at 809.843 kb on + strand, within RS_RS03865 at 809.844 kb on - strand, within RS_RS03865 at 810.047 kb on + strand at 810.103 kb on - strand at 810.105 kb on + strand at 810.105 kb on + strand at 810.105 kb on + strand at 810.106 kb on - strand at 810.106 kb on - strand at 810.106 kb on - strand at 810.106 kb on - strand at 810.109 kb on + strand at 810.109 kb on + strand at 810.110 kb on - strand at 810.110 kb on - strand at 810.126 kb on - strand at 810.126 kb on - strand at 810.126 kb on - strand at 810.220 kb on + strand at 810.223 kb on + strand at 810.223 kb on + strand at 810.223 kb on + strand at 810.223 kb on + strand at 810.223 kb on + strand at 810.223 kb on + strand at 810.223 kb on + strand at 810.223 kb on + strand at 810.224 kb on - strand at 810.224 kb on - strand at 810.224 kb on - strand at 810.224 kb on - strand at 810.224 kb on - strand at 810.229 kb on + strand at 810.229 kb on + strand at 810.230 kb on - strand at 810.233 kb on + strand at 810.233 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Sap; Sample=Stem; Collection=Plant_fluid_from_centrifuged_stems remove 807,292 - RS_RS03855 0.32 +0.2 807,675 + RS_RS03855 0.68 +0.0 807,685 - RS_RS03855 0.68 +0.9 807,708 + RS_RS03855 0.71 -2.9 807,708 + RS_RS03855 0.71 +0.3 807,708 + RS_RS03855 0.71 -0.6 807,709 - RS_RS03855 0.71 +0.6 807,709 - RS_RS03855 0.71 -0.9 807,709 - RS_RS03855 0.71 -3.7 807,709 - RS_RS03855 0.71 +0.6 807,831 + RS_RS03855 0.82 -0.9 808,033 + -0.3 808,033 + -0.4 808,033 + -1.4 808,037 + +0.5 808,037 + +0.4 808,038 - -2.0 808,038 - +0.4 808,038 - -1.3 808,038 - -1.2 808,038 - +0.4 808,038 - -1.9 808,039 + +0.3 808,039 + +1.6 808,040 - +1.7 808,041 - -0.7 808,246 + RS_RS03860 0.18 -0.4 808,348 + RS_RS03860 0.26 +1.3 808,348 + RS_RS03860 0.26 -0.3 808,808 - RS_RS03860 0.64 +0.1 808,808 - RS_RS03860 0.64 +1.0 808,808 - RS_RS03860 0.64 -1.0 808,819 + RS_RS03860 0.65 +0.7 808,820 - RS_RS03860 0.65 +0.6 808,849 + RS_RS03860 0.67 +0.5 808,850 - RS_RS03860 0.67 -0.7 809,312 + -0.1 809,313 - +0.0 809,381 + +0.6 809,381 + +1.7 809,382 - +0.0 809,489 + -0.8 809,709 - RS_RS03865 0.42 +1.2 809,711 + RS_RS03865 0.42 -0.6 809,711 + RS_RS03865 0.42 -0.1 809,712 - RS_RS03865 0.43 +1.0 809,843 + RS_RS03865 0.63 -1.1 809,844 - RS_RS03865 0.63 -1.0 810,047 + -1.0 810,103 - -0.2 810,105 + +0.3 810,105 + +0.5 810,105 + -0.9 810,106 - +1.2 810,106 - +0.2 810,106 - -0.5 810,106 - -0.5 810,109 + -0.4 810,109 + -0.6 810,110 - -0.1 810,110 - -2.8 810,126 - -2.0 810,126 - +1.2 810,126 - -0.5 810,220 + +0.9 810,223 + -0.1 810,223 + -1.9 810,223 + -2.1 810,223 + -0.7 810,223 + +0.3 810,223 + -0.7 810,223 + +0.5 810,223 + +0.1 810,224 - +0.4 810,224 - +1.3 810,224 - +0.7 810,224 - +0.1 810,224 - -1.2 810,229 + -2.3 810,229 + +1.1 810,230 - -1.3 810,233 + +1.2 810,233 + -0.5
Or see this region's nucleotide sequence