Experiment: Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Sap; Sample=Stem; Collection=Plant_fluid_from_centrifuged_stems
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS01100 and RS_RS01105 are separated by 266 nucleotides RS_RS01105 and RS_RS01110 overlap by 4 nucleotides RS_RS01110 and RS_RS01115 are separated by 88 nucleotides RS_RS01115 and RS_RS01120 are separated by 42 nucleotides
RS_RS01100: RS_RS01100 - sigma 54-dependent transcriptional regulator, at 243,896 to 245,503
_RS01100
RS_RS01105: RS_RS01105 - hypothetical protein, at 245,770 to 246,153
_RS01105
RS_RS01110: RS_RS01110 - RtcB family protein, at 246,150 to 247,370
_RS01110
RS_RS01115: RS_RS01115 - nucleotidyltransferase domain-containing protein, at 247,459 to 248,304
_RS01115
RS_RS01120: RS_RS01120 - RNA 3'-terminal phosphate cyclase, at 248,347 to 249,390
_RS01120
Position (kb) 246
247
248 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 245.182 kb on - strand, within RS_RS01100 at 245.208 kb on + strand, within RS_RS01100 at 245.239 kb on - strand, within RS_RS01100 at 245.515 kb on + strand at 245.525 kb on + strand at 245.525 kb on + strand at 245.678 kb on + strand at 245.679 kb on - strand at 245.929 kb on + strand, within RS_RS01105 at 245.929 kb on + strand, within RS_RS01105 at 245.930 kb on - strand, within RS_RS01105 at 245.930 kb on - strand, within RS_RS01105 at 245.959 kb on + strand, within RS_RS01105 at 245.960 kb on - strand, within RS_RS01105 at 245.962 kb on + strand, within RS_RS01105 at 245.963 kb on - strand, within RS_RS01105 at 245.963 kb on - strand, within RS_RS01105 at 246.037 kb on + strand, within RS_RS01105 at 246.038 kb on - strand, within RS_RS01105 at 246.038 kb on - strand, within RS_RS01105 at 246.055 kb on + strand, within RS_RS01105 at 246.055 kb on + strand, within RS_RS01105 at 246.165 kb on + strand at 246.165 kb on + strand at 246.165 kb on + strand at 246.166 kb on - strand at 246.166 kb on - strand at 246.597 kb on + strand, within RS_RS01110 at 246.785 kb on + strand, within RS_RS01110 at 246.817 kb on - strand, within RS_RS01110 at 246.849 kb on + strand, within RS_RS01110 at 246.850 kb on - strand, within RS_RS01110 at 246.879 kb on + strand, within RS_RS01110 at 246.879 kb on + strand, within RS_RS01110 at 246.880 kb on - strand, within RS_RS01110 at 246.880 kb on - strand, within RS_RS01110 at 246.990 kb on + strand, within RS_RS01110 at 246.990 kb on + strand, within RS_RS01110 at 246.990 kb on + strand, within RS_RS01110 at 246.990 kb on + strand, within RS_RS01110 at 246.991 kb on - strand, within RS_RS01110 at 246.991 kb on - strand, within RS_RS01110 at 246.991 kb on - strand, within RS_RS01110 at 246.991 kb on - strand, within RS_RS01110 at 246.991 kb on - strand, within RS_RS01110 at 247.197 kb on + strand, within RS_RS01110 at 247.281 kb on + strand at 247.282 kb on - strand at 247.282 kb on - strand at 247.282 kb on - strand at 247.282 kb on - strand at 247.337 kb on + strand at 247.369 kb on - strand at 247.916 kb on - strand, within RS_RS01115 at 247.982 kb on - strand, within RS_RS01115 at 247.987 kb on + strand, within RS_RS01115 at 247.987 kb on + strand, within RS_RS01115 at 247.987 kb on + strand, within RS_RS01115 at 247.988 kb on - strand, within RS_RS01115 at 247.988 kb on - strand, within RS_RS01115 at 247.988 kb on - strand, within RS_RS01115 at 247.988 kb on - strand, within RS_RS01115 at 247.988 kb on - strand, within RS_RS01115 at 247.988 kb on - strand, within RS_RS01115 at 247.988 kb on - strand, within RS_RS01115 at 248.149 kb on + strand, within RS_RS01115 at 248.149 kb on + strand, within RS_RS01115 at 248.149 kb on + strand, within RS_RS01115 at 248.150 kb on - strand, within RS_RS01115 at 248.266 kb on + strand at 248.267 kb on - strand at 248.267 kb on - strand at 248.337 kb on + strand at 248.337 kb on + strand at 248.337 kb on + strand at 248.360 kb on + strand at 248.361 kb on - strand at 248.361 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Sap; Sample=Stem; Collection=Plant_fluid_from_centrifuged_stems remove 245,182 - RS_RS01100 0.80 +0.3 245,208 + RS_RS01100 0.82 -0.7 245,239 - RS_RS01100 0.84 -2.3 245,515 + -2.0 245,525 + -2.5 245,525 + +2.9 245,678 + +0.4 245,679 - -0.3 245,929 + RS_RS01105 0.41 +0.2 245,929 + RS_RS01105 0.41 +0.5 245,930 - RS_RS01105 0.42 +0.8 245,930 - RS_RS01105 0.42 -0.9 245,959 + RS_RS01105 0.49 +0.9 245,960 - RS_RS01105 0.49 +1.2 245,962 + RS_RS01105 0.50 -0.8 245,963 - RS_RS01105 0.50 -0.3 245,963 - RS_RS01105 0.50 -0.5 246,037 + RS_RS01105 0.70 +1.5 246,038 - RS_RS01105 0.70 -1.7 246,038 - RS_RS01105 0.70 -0.1 246,055 + RS_RS01105 0.74 -0.2 246,055 + RS_RS01105 0.74 -0.4 246,165 + +0.2 246,165 + -0.1 246,165 + -0.4 246,166 - -0.5 246,166 - -3.6 246,597 + RS_RS01110 0.37 -0.7 246,785 + RS_RS01110 0.52 +0.7 246,817 - RS_RS01110 0.55 -0.8 246,849 + RS_RS01110 0.57 +0.5 246,850 - RS_RS01110 0.57 -1.9 246,879 + RS_RS01110 0.60 +1.3 246,879 + RS_RS01110 0.60 +1.6 246,880 - RS_RS01110 0.60 -0.0 246,880 - RS_RS01110 0.60 -1.4 246,990 + RS_RS01110 0.69 +0.2 246,990 + RS_RS01110 0.69 -0.0 246,990 + RS_RS01110 0.69 -0.0 246,990 + RS_RS01110 0.69 +0.0 246,991 - RS_RS01110 0.69 -0.7 246,991 - RS_RS01110 0.69 -1.5 246,991 - RS_RS01110 0.69 +0.1 246,991 - RS_RS01110 0.69 +0.5 246,991 - RS_RS01110 0.69 +0.6 247,197 + RS_RS01110 0.86 +0.6 247,281 + +0.5 247,282 - +0.3 247,282 - -0.2 247,282 - -1.3 247,282 - +0.4 247,337 + +1.5 247,369 - +0.0 247,916 - RS_RS01115 0.54 +0.3 247,982 - RS_RS01115 0.62 +1.2 247,987 + RS_RS01115 0.62 -1.0 247,987 + RS_RS01115 0.62 +0.2 247,987 + RS_RS01115 0.62 +0.9 247,988 - RS_RS01115 0.63 +0.8 247,988 - RS_RS01115 0.63 -2.9 247,988 - RS_RS01115 0.63 -0.3 247,988 - RS_RS01115 0.63 +0.5 247,988 - RS_RS01115 0.63 -0.1 247,988 - RS_RS01115 0.63 -1.3 247,988 - RS_RS01115 0.63 +0.6 248,149 + RS_RS01115 0.82 +1.9 248,149 + RS_RS01115 0.82 -0.1 248,149 + RS_RS01115 0.82 +1.4 248,150 - RS_RS01115 0.82 +1.7 248,266 + +0.4 248,267 - -0.1 248,267 - -0.3 248,337 + -0.2 248,337 + -0.4 248,337 + +0.5 248,360 + -0.7 248,361 - -3.6 248,361 - +0.0
Or see this region's nucleotide sequence