Experiment: Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Sap; Sample=Stem; Collection=Plant_fluid_from_centrifuged_stems
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS00255 and RS_RS00260 are separated by 39 nucleotides RS_RS00260 and RS_RS00265 are separated by 13 nucleotides RS_RS00265 and RS_RS00270 overlap by 1 nucleotides
RS_RS00255: RS_RS00255 - class I SAM-dependent rRNA methyltransferase, at 56,123 to 57,316
_RS00255
RS_RS00260: RS_RS00260 - Tyrosine recombinase XerC 1, at 57,356 to 58,345
_RS00260
RS_RS00265: RS_RS00265 - DUF484 domain-containing protein, at 58,359 to 59,072
_RS00265
RS_RS00270: RS_RS00270 - Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase GatCAB subunit B, at 59,072 to 60,538
_RS00270
Position (kb) 57
58
59 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 56.361 kb on + strand, within RS_RS00255 at 56.361 kb on + strand, within RS_RS00255 at 56.361 kb on + strand, within RS_RS00255 at 56.362 kb on - strand, within RS_RS00255 at 56.625 kb on + strand, within RS_RS00255 at 56.625 kb on + strand, within RS_RS00255 at 56.626 kb on - strand, within RS_RS00255 at 56.700 kb on + strand, within RS_RS00255 at 56.701 kb on - strand, within RS_RS00255 at 56.736 kb on + strand, within RS_RS00255 at 56.736 kb on + strand, within RS_RS00255 at 56.736 kb on + strand, within RS_RS00255 at 56.736 kb on + strand, within RS_RS00255 at 56.736 kb on + strand, within RS_RS00255 at 56.737 kb on - strand, within RS_RS00255 at 56.737 kb on - strand, within RS_RS00255 at 56.737 kb on - strand, within RS_RS00255 at 56.737 kb on - strand, within RS_RS00255 at 56.739 kb on + strand, within RS_RS00255 at 56.739 kb on + strand, within RS_RS00255 at 56.740 kb on - strand, within RS_RS00255 at 56.854 kb on - strand, within RS_RS00255 at 56.854 kb on - strand, within RS_RS00255 at 57.254 kb on + strand at 57.255 kb on - strand at 57.390 kb on + strand at 57.391 kb on - strand at 57.424 kb on + strand at 57.424 kb on + strand at 57.873 kb on + strand, within RS_RS00260 at 57.873 kb on + strand, within RS_RS00260 at 57.873 kb on + strand, within RS_RS00260 at 57.873 kb on + strand, within RS_RS00260 at 58.057 kb on - strand, within RS_RS00260 at 58.224 kb on + strand, within RS_RS00260 at 58.225 kb on - strand, within RS_RS00260 at 58.279 kb on - strand at 58.279 kb on - strand at 58.414 kb on + strand at 58.415 kb on - strand at 58.415 kb on - strand at 58.415 kb on - strand at 58.783 kb on + strand, within RS_RS00265 at 59.039 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Sap; Sample=Stem; Collection=Plant_fluid_from_centrifuged_stems remove 56,361 + RS_RS00255 0.20 +0.8 56,361 + RS_RS00255 0.20 +1.1 56,361 + RS_RS00255 0.20 +0.3 56,362 - RS_RS00255 0.20 +0.3 56,625 + RS_RS00255 0.42 +1.8 56,625 + RS_RS00255 0.42 +0.9 56,626 - RS_RS00255 0.42 -1.4 56,700 + RS_RS00255 0.48 -0.7 56,701 - RS_RS00255 0.48 +0.1 56,736 + RS_RS00255 0.51 -0.7 56,736 + RS_RS00255 0.51 -0.5 56,736 + RS_RS00255 0.51 -0.4 56,736 + RS_RS00255 0.51 +0.8 56,736 + RS_RS00255 0.51 -1.1 56,737 - RS_RS00255 0.51 +1.2 56,737 - RS_RS00255 0.51 +0.4 56,737 - RS_RS00255 0.51 -0.8 56,737 - RS_RS00255 0.51 +0.0 56,739 + RS_RS00255 0.52 -2.2 56,739 + RS_RS00255 0.52 -0.2 56,740 - RS_RS00255 0.52 +0.9 56,854 - RS_RS00255 0.61 +0.1 56,854 - RS_RS00255 0.61 -1.0 57,254 + -2.0 57,255 - +0.2 57,390 + +0.6 57,391 - -1.0 57,424 + -0.8 57,424 + -3.2 57,873 + RS_RS00260 0.52 -1.0 57,873 + RS_RS00260 0.52 +0.1 57,873 + RS_RS00260 0.52 -0.1 57,873 + RS_RS00260 0.52 -0.7 58,057 - RS_RS00260 0.71 -1.6 58,224 + RS_RS00260 0.88 -0.2 58,225 - RS_RS00260 0.88 -0.6 58,279 - -1.0 58,279 - -0.3 58,414 + +0.6 58,415 - -0.0 58,415 - +2.4 58,415 - -0.7 58,783 + RS_RS00265 0.59 -0.1 59,039 - -1.5
Or see this region's nucleotide sequence