Experiment: Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Sap; Sample=Stem; Collection=Plant_fluid_from_centrifuged_stems
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS00145 and RS_RS00150 are separated by 150 nucleotides RS_RS00150 and RS_RS00155 are separated by 194 nucleotides RS_RS00155 and RS_RS00160 are separated by 38 nucleotides
RS_RS00145: RS_RS00145 - 4-aminobutyrate--2-oxoglutarate transaminase, at 34,078 to 35,358
_RS00145
RS_RS00150: RS_RS00150 - PLP-dependent aminotransferase family protein, at 35,509 to 37,005
_RS00150
RS_RS00155: RS_RS00155 - nucleoid occlusion factor SlmA, at 37,200 to 37,856
_RS00155
RS_RS00160: RS_RS00160 - pyrimidine 5'-nucleotidase, at 37,895 to 38,758
_RS00160
Position (kb) 35
36
37
38 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 34.700 kb on + strand, within RS_RS00145 at 34.700 kb on + strand, within RS_RS00145 at 34.701 kb on - strand, within RS_RS00145 at 34.844 kb on + strand, within RS_RS00145 at 34.845 kb on - strand, within RS_RS00145 at 34.845 kb on - strand, within RS_RS00145 at 34.845 kb on - strand, within RS_RS00145 at 34.845 kb on - strand, within RS_RS00145 at 34.880 kb on + strand, within RS_RS00145 at 34.880 kb on + strand, within RS_RS00145 at 34.880 kb on + strand, within RS_RS00145 at 35.087 kb on + strand, within RS_RS00145 at 35.087 kb on + strand, within RS_RS00145 at 35.088 kb on - strand, within RS_RS00145 at 35.096 kb on + strand, within RS_RS00145 at 35.097 kb on - strand, within RS_RS00145 at 35.216 kb on + strand, within RS_RS00145 at 35.217 kb on - strand, within RS_RS00145 at 35.217 kb on - strand, within RS_RS00145 at 35.521 kb on + strand at 35.521 kb on + strand at 35.521 kb on + strand at 35.522 kb on - strand at 35.722 kb on + strand, within RS_RS00150 at 35.722 kb on + strand, within RS_RS00150 at 35.722 kb on + strand, within RS_RS00150 at 35.722 kb on + strand, within RS_RS00150 at 35.722 kb on + strand, within RS_RS00150 at 35.723 kb on - strand, within RS_RS00150 at 35.723 kb on - strand, within RS_RS00150 at 35.723 kb on - strand, within RS_RS00150 at 35.723 kb on - strand, within RS_RS00150 at 35.723 kb on - strand, within RS_RS00150 at 36.031 kb on + strand, within RS_RS00150 at 36.032 kb on - strand, within RS_RS00150 at 36.032 kb on - strand, within RS_RS00150 at 36.197 kb on - strand, within RS_RS00150 at 36.433 kb on + strand, within RS_RS00150 at 36.434 kb on - strand, within RS_RS00150 at 36.434 kb on - strand, within RS_RS00150 at 36.434 kb on - strand, within RS_RS00150 at 36.508 kb on + strand, within RS_RS00150 at 36.508 kb on + strand, within RS_RS00150 at 36.508 kb on + strand, within RS_RS00150 at 36.508 kb on + strand, within RS_RS00150 at 36.509 kb on - strand, within RS_RS00150 at 36.509 kb on - strand, within RS_RS00150 at 36.509 kb on - strand, within RS_RS00150 at 36.556 kb on + strand, within RS_RS00150 at 36.706 kb on + strand, within RS_RS00150 at 36.707 kb on - strand, within RS_RS00150 at 36.889 kb on + strand at 36.889 kb on + strand at 36.889 kb on + strand at 37.057 kb on - strand at 37.150 kb on + strand at 37.150 kb on + strand at 37.150 kb on + strand at 37.270 kb on + strand, within RS_RS00155 at 37.642 kb on + strand, within RS_RS00155 at 37.642 kb on + strand, within RS_RS00155 at 37.642 kb on + strand, within RS_RS00155 at 37.643 kb on - strand, within RS_RS00155 at 37.643 kb on - strand, within RS_RS00155 at 37.819 kb on - strand at 37.819 kb on - strand at 37.897 kb on - strand at 37.928 kb on + strand at 37.928 kb on + strand at 37.929 kb on - strand at 37.929 kb on - strand at 37.929 kb on - strand at 37.929 kb on - strand at 37.946 kb on + strand at 37.962 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Sap; Sample=Stem; Collection=Plant_fluid_from_centrifuged_stems remove 34,700 + RS_RS00145 0.49 -3.3 34,700 + RS_RS00145 0.49 -1.3 34,701 - RS_RS00145 0.49 -2.7 34,844 + RS_RS00145 0.60 -0.1 34,845 - RS_RS00145 0.60 +0.6 34,845 - RS_RS00145 0.60 -1.3 34,845 - RS_RS00145 0.60 -1.1 34,845 - RS_RS00145 0.60 -0.7 34,880 + RS_RS00145 0.63 -1.9 34,880 + RS_RS00145 0.63 -0.5 34,880 + RS_RS00145 0.63 +0.5 35,087 + RS_RS00145 0.79 +0.6 35,087 + RS_RS00145 0.79 -1.1 35,088 - RS_RS00145 0.79 -0.6 35,096 + RS_RS00145 0.79 -0.2 35,097 - RS_RS00145 0.80 +0.1 35,216 + RS_RS00145 0.89 -2.4 35,217 - RS_RS00145 0.89 +1.1 35,217 - RS_RS00145 0.89 +0.1 35,521 + -2.1 35,521 + -0.6 35,521 + -1.2 35,522 - +0.3 35,722 + RS_RS00150 0.14 +1.0 35,722 + RS_RS00150 0.14 +0.2 35,722 + RS_RS00150 0.14 +1.6 35,722 + RS_RS00150 0.14 -0.2 35,722 + RS_RS00150 0.14 +0.3 35,723 - RS_RS00150 0.14 +0.6 35,723 - RS_RS00150 0.14 -1.9 35,723 - RS_RS00150 0.14 +1.1 35,723 - RS_RS00150 0.14 -0.8 35,723 - RS_RS00150 0.14 -1.6 36,031 + RS_RS00150 0.35 -1.6 36,032 - RS_RS00150 0.35 +0.5 36,032 - RS_RS00150 0.35 -0.6 36,197 - RS_RS00150 0.46 +1.0 36,433 + RS_RS00150 0.62 +0.9 36,434 - RS_RS00150 0.62 -1.5 36,434 - RS_RS00150 0.62 -1.8 36,434 - RS_RS00150 0.62 -0.3 36,508 + RS_RS00150 0.67 -1.4 36,508 + RS_RS00150 0.67 +1.2 36,508 + RS_RS00150 0.67 +0.1 36,508 + RS_RS00150 0.67 -0.4 36,509 - RS_RS00150 0.67 +0.9 36,509 - RS_RS00150 0.67 +0.3 36,509 - RS_RS00150 0.67 +1.3 36,556 + RS_RS00150 0.70 +0.6 36,706 + RS_RS00150 0.80 +0.4 36,707 - RS_RS00150 0.80 +0.2 36,889 + +0.4 36,889 + -0.8 36,889 + +1.1 37,057 - -0.3 37,150 + -0.2 37,150 + +1.4 37,150 + -0.2 37,270 + RS_RS00155 0.11 -0.2 37,642 + RS_RS00155 0.67 +1.2 37,642 + RS_RS00155 0.67 +0.8 37,642 + RS_RS00155 0.67 -1.3 37,643 - RS_RS00155 0.67 +0.1 37,643 - RS_RS00155 0.67 +0.2 37,819 - -1.3 37,819 - +0.1 37,897 - -1.6 37,928 + -1.3 37,928 + -1.0 37,929 - -0.1 37,929 - -1.5 37,929 - -0.6 37,929 - -0.1 37,946 + -0.2 37,962 + +0.4
Or see this region's nucleotide sequence