Experiment: Valeric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_06515 and H281DRAFT_06516 overlap by 4 nucleotides H281DRAFT_06516 and H281DRAFT_06517 are separated by 248 nucleotides H281DRAFT_06517 and H281DRAFT_06518 are separated by 92 nucleotides
H281DRAFT_06515: H281DRAFT_06515 - uncharacterized domain 1-containing protein, at 64,599 to 65,054
_06515
H281DRAFT_06516: H281DRAFT_06516 - transcriptional regulator, TetR family, at 65,051 to 65,644
_06516
H281DRAFT_06517: H281DRAFT_06517 - DNA-binding transcriptional regulator, LysR family, at 65,893 to 66,837
_06517
H281DRAFT_06518: H281DRAFT_06518 - hypothetical protein, at 66,930 to 67,103
_06518
Position (kb) 65
66
67 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 65.035 kb on - strand at 65.109 kb on - strand at 65.679 kb on - strand at 65.901 kb on + strand at 66.234 kb on + strand, within H281DRAFT_06517 at 66.444 kb on - strand at 66.444 kb on - strand, within H281DRAFT_06517 at 66.843 kb on - strand at 66.849 kb on - strand at 66.849 kb on - strand at 66.904 kb on + strand at 67.047 kb on - strand, within H281DRAFT_06518 at 67.047 kb on - strand, within H281DRAFT_06518 at 67.061 kb on + strand, within H281DRAFT_06518 at 67.061 kb on + strand, within H281DRAFT_06518 at 67.062 kb on - strand, within H281DRAFT_06518 at 67.062 kb on - strand, within H281DRAFT_06518
Per-strain Table
Position Strand Gene LocusTag Fraction Valeric (C) remove 65,035 - -0.4 65,109 - +1.0 65,679 - -1.6 65,901 + -0.1 66,234 + H281DRAFT_06517 0.36 -1.0 66,444 - +0.2 66,444 - H281DRAFT_06517 0.58 +0.4 66,843 - -2.6 66,849 - -1.5 66,849 - -0.9 66,904 + +0.6 67,047 - H281DRAFT_06518 0.67 -1.5 67,047 - H281DRAFT_06518 0.67 -2.5 67,061 + H281DRAFT_06518 0.75 -3.0 67,061 + H281DRAFT_06518 0.75 +0.3 67,062 - H281DRAFT_06518 0.76 -1.1 67,062 - H281DRAFT_06518 0.76 -0.9
Or see this region's nucleotide sequence