Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05886

Experiment: Valeric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05885 and H281DRAFT_05886 are separated by 2 nucleotidesH281DRAFT_05886 and H281DRAFT_05887 overlap by 4 nucleotides H281DRAFT_05885: H281DRAFT_05885 - dihydroxyacetone kinase DhaK subunit, at 23,455 to 24,444 _05885 H281DRAFT_05886: H281DRAFT_05886 - dihydroxyacetone kinase DhaL subunit, at 24,447 to 25,088 _05886 H281DRAFT_05887: H281DRAFT_05887 - carbohydrate ABC transporter ATP-binding protein, CUT1 family, at 25,085 to 26,122 _05887 Position (kb) 24 25 26Strain fitness (log2 ratio) -1 0 1at 23.728 kb on + strand, within H281DRAFT_05885at 23.905 kb on - strand, within H281DRAFT_05885at 24.026 kb on + strand, within H281DRAFT_05885at 25.048 kb on + strandat 25.119 kb on + strandat 25.552 kb on - strand, within H281DRAFT_05887at 25.885 kb on + strand, within H281DRAFT_05887at 26.060 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Valeric (C)
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23,728 + H281DRAFT_05885 0.28 +1.6
23,905 - H281DRAFT_05885 0.45 +0.4
24,026 + H281DRAFT_05885 0.58 +0.5
25,048 + +0.2
25,119 + +0.5
25,552 - H281DRAFT_05887 0.45 +1.5
25,885 + H281DRAFT_05887 0.77 +0.7
26,060 - -1.7

Or see this region's nucleotide sequence