Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05723

Experiment: Valeric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05721 and H281DRAFT_05722 are separated by 1 nucleotidesH281DRAFT_05722 and H281DRAFT_05723 are separated by 53 nucleotidesH281DRAFT_05723 and H281DRAFT_05724 are separated by 121 nucleotides H281DRAFT_05721: H281DRAFT_05721 - acyl-CoA thioesterase, at 140,556 to 141,044 _05721 H281DRAFT_05722: H281DRAFT_05722 - 1,2-epoxyphenylacetyl-CoA isomerase (EC 5.3.3.18) (from data), at 141,046 to 141,837 _05722 H281DRAFT_05723: H281DRAFT_05723 - bifunctional thiolase PaaJ: 3-oxo-5,6-didehydrosuberyl-CoA thiolase (EC 2.3.1.223); 3-oxoadipyl-CoA thiolase (EC 2.3.1.174) (from data), at 141,891 to 143,093 _05723 H281DRAFT_05724: H281DRAFT_05724 - 3-oxo-5,6-didehydrosuberyl-CoA semialdehyde dehydrogenase PaaZ (EC:1.2.1.91) (from data), at 143,215 to 144,915 _05724 Position (kb) 141 142 143 144Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 140.912 kb on - strand, within H281DRAFT_05721at 140.972 kb on - strand, within H281DRAFT_05721at 140.972 kb on - strand, within H281DRAFT_05721at 141.025 kb on + strandat 141.025 kb on + strandat 141.044 kb on + strandat 141.045 kb on - strandat 141.045 kb on - strandat 141.045 kb on - strandat 141.104 kb on + strandat 141.104 kb on + strandat 141.104 kb on + strandat 141.199 kb on - strand, within H281DRAFT_05722at 141.199 kb on - strand, within H281DRAFT_05722at 141.199 kb on - strand, within H281DRAFT_05722at 141.295 kb on - strand, within H281DRAFT_05722at 141.295 kb on - strand, within H281DRAFT_05722at 141.295 kb on - strand, within H281DRAFT_05722at 141.295 kb on - strand, within H281DRAFT_05722at 141.295 kb on - strand, within H281DRAFT_05722at 141.295 kb on - strand, within H281DRAFT_05722at 141.295 kb on - strand, within H281DRAFT_05722at 141.353 kb on - strand, within H281DRAFT_05722at 141.527 kb on - strand, within H281DRAFT_05722at 141.791 kb on - strandat 141.830 kb on + strandat 141.880 kb on + strandat 141.880 kb on + strandat 141.880 kb on + strandat 141.881 kb on - strandat 141.884 kb on + strandat 141.884 kb on + strandat 141.884 kb on + strandat 141.884 kb on + strandat 141.885 kb on - strandat 141.885 kb on - strandat 141.885 kb on - strandat 141.907 kb on - strandat 142.276 kb on + strand, within H281DRAFT_05723at 142.276 kb on + strand, within H281DRAFT_05723at 142.353 kb on + strand, within H281DRAFT_05723at 142.354 kb on - strand, within H281DRAFT_05723at 142.374 kb on + strand, within H281DRAFT_05723at 142.374 kb on + strand, within H281DRAFT_05723at 142.374 kb on + strand, within H281DRAFT_05723at 142.375 kb on - strand, within H281DRAFT_05723at 142.375 kb on - strand, within H281DRAFT_05723at 142.375 kb on - strand, within H281DRAFT_05723at 142.375 kb on - strand, within H281DRAFT_05723at 142.375 kb on - strand, within H281DRAFT_05723at 142.837 kb on - strand, within H281DRAFT_05723at 142.933 kb on + strand, within H281DRAFT_05723at 142.933 kb on + strand, within H281DRAFT_05723at 142.934 kb on - strand, within H281DRAFT_05723at 142.934 kb on - strand, within H281DRAFT_05723at 142.934 kb on - strand, within H281DRAFT_05723at 142.974 kb on - strandat 143.078 kb on + strandat 143.078 kb on + strandat 143.080 kb on + strandat 143.081 kb on - strandat 143.094 kb on - strandat 143.094 kb on - strandat 143.105 kb on + strandat 143.144 kb on + strandat 143.144 kb on + strandat 143.145 kb on - strandat 143.145 kb on - strandat 143.145 kb on - strandat 143.145 kb on - strandat 143.145 kb on - strandat 143.145 kb on - strandat 143.145 kb on - strandat 143.145 kb on - strandat 143.145 kb on - strandat 143.184 kb on + strandat 143.185 kb on - strandat 143.185 kb on - strandat 143.207 kb on + strandat 143.207 kb on + strandat 143.225 kb on - strandat 143.401 kb on + strand, within H281DRAFT_05724at 143.867 kb on + strand, within H281DRAFT_05724at 143.867 kb on + strand, within H281DRAFT_05724at 143.867 kb on + strand, within H281DRAFT_05724at 143.867 kb on + strand, within H281DRAFT_05724at 143.867 kb on + strand, within H281DRAFT_05724at 143.996 kb on + strand, within H281DRAFT_05724at 143.996 kb on + strand, within H281DRAFT_05724

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Per-strain Table

Position Strand Gene LocusTag Fraction Valeric (C)
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140,912 - H281DRAFT_05721 0.73 +1.7
140,972 - H281DRAFT_05721 0.85 -0.4
140,972 - H281DRAFT_05721 0.85 +0.6
141,025 + -1.0
141,025 + +0.0
141,044 + +1.2
141,045 - +1.6
141,045 - +0.9
141,045 - +0.4
141,104 + +1.2
141,104 + +0.4
141,104 + -0.5
141,199 - H281DRAFT_05722 0.19 -0.4
141,199 - H281DRAFT_05722 0.19 +0.1
141,199 - H281DRAFT_05722 0.19 +0.3
141,295 - H281DRAFT_05722 0.31 +0.6
141,295 - H281DRAFT_05722 0.31 -2.6
141,295 - H281DRAFT_05722 0.31 -0.6
141,295 - H281DRAFT_05722 0.31 +0.8
141,295 - H281DRAFT_05722 0.31 +0.4
141,295 - H281DRAFT_05722 0.31 +0.1
141,295 - H281DRAFT_05722 0.31 +1.0
141,353 - H281DRAFT_05722 0.39 +0.3
141,527 - H281DRAFT_05722 0.61 +0.7
141,791 - +2.9
141,830 + -0.1
141,880 + -2.1
141,880 + -0.0
141,880 + +0.1
141,881 - +0.7
141,884 + +2.3
141,884 + -0.0
141,884 + -1.0
141,884 + +0.2
141,885 - +0.7
141,885 - +0.5
141,885 - +0.7
141,907 - -0.1
142,276 + H281DRAFT_05723 0.32 -2.3
142,276 + H281DRAFT_05723 0.32 -2.9
142,353 + H281DRAFT_05723 0.38 +0.8
142,354 - H281DRAFT_05723 0.38 +0.3
142,374 + H281DRAFT_05723 0.40 -0.2
142,374 + H281DRAFT_05723 0.40 -1.4
142,374 + H281DRAFT_05723 0.40 -0.0
142,375 - H281DRAFT_05723 0.40 -0.3
142,375 - H281DRAFT_05723 0.40 +0.1
142,375 - H281DRAFT_05723 0.40 -0.3
142,375 - H281DRAFT_05723 0.40 -0.9
142,375 - H281DRAFT_05723 0.40 -1.0
142,837 - H281DRAFT_05723 0.79 +1.2
142,933 + H281DRAFT_05723 0.87 -0.9
142,933 + H281DRAFT_05723 0.87 +0.5
142,934 - H281DRAFT_05723 0.87 -1.5
142,934 - H281DRAFT_05723 0.87 +0.1
142,934 - H281DRAFT_05723 0.87 +0.1
142,974 - -0.4
143,078 + +0.1
143,078 + +0.0
143,080 + -1.6
143,081 - -0.3
143,094 - +0.1
143,094 - -1.3
143,105 + -0.7
143,144 + -0.9
143,144 + +1.1
143,145 - +0.3
143,145 - +0.1
143,145 - +0.4
143,145 - +1.5
143,145 - -0.5
143,145 - +0.1
143,145 - +0.4
143,145 - +0.3
143,145 - -0.2
143,184 + -0.0
143,185 - +0.0
143,185 - +0.8
143,207 + -0.2
143,207 + +0.4
143,225 - -0.2
143,401 + H281DRAFT_05724 0.11 +2.2
143,867 + H281DRAFT_05724 0.38 -0.6
143,867 + H281DRAFT_05724 0.38 -1.2
143,867 + H281DRAFT_05724 0.38 +1.1
143,867 + H281DRAFT_05724 0.38 -0.8
143,867 + H281DRAFT_05724 0.38 +0.3
143,996 + H281DRAFT_05724 0.46 +1.2
143,996 + H281DRAFT_05724 0.46 -0.3

Or see this region's nucleotide sequence