Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05716

Experiment: Valeric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05715 and H281DRAFT_05716 are separated by 365 nucleotidesH281DRAFT_05716 and H281DRAFT_05717 are separated by 12 nucleotidesH281DRAFT_05717 and H281DRAFT_05718 are separated by 256 nucleotides H281DRAFT_05715: H281DRAFT_05715 - anthranilate synthase, component I, at 133,623 to 135,116 _05715 H281DRAFT_05716: H281DRAFT_05716 - phosphoglycolate phosphatase, at 135,482 to 136,198 _05716 H281DRAFT_05717: H281DRAFT_05717 - ribulose-5-phosphate 3-epimerase, at 136,211 to 136,927 _05717 H281DRAFT_05718: H281DRAFT_05718 - ApaG protein, at 137,184 to 137,558 _05718 Position (kb) 135 136 137Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 134.566 kb on + strand, within H281DRAFT_05715at 134.567 kb on - strand, within H281DRAFT_05715at 134.593 kb on + strand, within H281DRAFT_05715at 134.594 kb on - strand, within H281DRAFT_05715at 134.605 kb on + strandat 134.620 kb on - strand, within H281DRAFT_05715at 134.620 kb on - strand, within H281DRAFT_05715at 134.696 kb on + strand, within H281DRAFT_05715at 134.697 kb on - strand, within H281DRAFT_05715at 134.719 kb on + strand, within H281DRAFT_05715at 134.720 kb on - strand, within H281DRAFT_05715at 134.720 kb on - strand, within H281DRAFT_05715at 134.720 kb on - strand, within H281DRAFT_05715at 134.743 kb on + strand, within H281DRAFT_05715at 134.744 kb on - strand, within H281DRAFT_05715at 134.869 kb on - strand, within H281DRAFT_05715at 135.016 kb on + strandat 135.017 kb on - strandat 135.068 kb on + strandat 135.068 kb on + strandat 135.129 kb on + strandat 135.129 kb on + strandat 135.129 kb on + strandat 135.129 kb on + strandat 135.133 kb on + strandat 135.133 kb on + strandat 135.133 kb on + strandat 135.133 kb on + strandat 135.133 kb on + strandat 135.134 kb on - strandat 135.134 kb on - strandat 135.134 kb on - strandat 135.268 kb on - strandat 135.268 kb on - strandat 135.278 kb on + strandat 135.279 kb on - strandat 135.279 kb on - strandat 135.345 kb on + strandat 135.378 kb on - strandat 135.436 kb on - strandat 135.539 kb on + strandat 135.539 kb on + strandat 135.539 kb on + strandat 135.539 kb on + strandat 135.540 kb on - strandat 135.540 kb on - strandat 135.541 kb on + strandat 135.541 kb on + strandat 135.541 kb on + strandat 135.542 kb on - strandat 135.542 kb on - strandat 135.542 kb on - strandat 135.555 kb on - strand, within H281DRAFT_05716at 135.565 kb on + strand, within H281DRAFT_05716at 135.565 kb on + strand, within H281DRAFT_05716at 135.566 kb on - strand, within H281DRAFT_05716at 135.566 kb on - strand, within H281DRAFT_05716at 135.582 kb on + strand, within H281DRAFT_05716at 135.582 kb on + strand, within H281DRAFT_05716at 135.583 kb on - strand, within H281DRAFT_05716at 135.583 kb on - strand, within H281DRAFT_05716at 135.583 kb on - strand, within H281DRAFT_05716at 135.765 kb on + strand, within H281DRAFT_05716at 135.766 kb on - strand, within H281DRAFT_05716at 135.766 kb on - strand, within H281DRAFT_05716at 135.781 kb on - strand, within H281DRAFT_05716at 135.930 kb on + strand, within H281DRAFT_05716at 135.931 kb on - strand, within H281DRAFT_05716at 135.931 kb on - strand, within H281DRAFT_05716at 136.004 kb on + strand, within H281DRAFT_05716at 136.005 kb on - strand, within H281DRAFT_05716at 136.005 kb on - strand, within H281DRAFT_05716at 136.029 kb on + strand, within H281DRAFT_05716at 136.396 kb on - strand, within H281DRAFT_05717at 136.406 kb on - strand, within H281DRAFT_05717at 136.406 kb on - strand, within H281DRAFT_05717at 136.406 kb on - strand, within H281DRAFT_05717at 136.511 kb on + strand, within H281DRAFT_05717at 136.511 kb on + strand, within H281DRAFT_05717at 136.512 kb on - strand, within H281DRAFT_05717at 136.512 kb on - strand, within H281DRAFT_05717at 136.715 kb on + strand, within H281DRAFT_05717at 136.715 kb on + strand, within H281DRAFT_05717at 136.716 kb on - strand, within H281DRAFT_05717at 136.716 kb on - strand, within H281DRAFT_05717at 136.716 kb on - strand, within H281DRAFT_05717at 136.770 kb on + strand, within H281DRAFT_05717at 136.770 kb on + strand, within H281DRAFT_05717at 136.770 kb on + strand, within H281DRAFT_05717at 136.770 kb on + strand, within H281DRAFT_05717at 136.770 kb on + strand, within H281DRAFT_05717at 136.771 kb on - strand, within H281DRAFT_05717at 136.771 kb on - strand, within H281DRAFT_05717at 136.771 kb on - strand, within H281DRAFT_05717at 136.771 kb on - strand, within H281DRAFT_05717at 136.771 kb on - strand, within H281DRAFT_05717at 136.930 kb on + strandat 137.028 kb on - strandat 137.048 kb on + strandat 137.048 kb on + strandat 137.048 kb on + strandat 137.049 kb on - strandat 137.049 kb on - strandat 137.049 kb on - strandat 137.049 kb on - strandat 137.049 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Valeric (C)
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134,566 + H281DRAFT_05715 0.63 -2.8
134,567 - H281DRAFT_05715 0.63 -4.8
134,593 + H281DRAFT_05715 0.65 -2.3
134,594 - H281DRAFT_05715 0.65 -3.3
134,605 + +0.9
134,620 - H281DRAFT_05715 0.67 -5.5
134,620 - H281DRAFT_05715 0.67 -0.6
134,696 + H281DRAFT_05715 0.72 -3.0
134,697 - H281DRAFT_05715 0.72 -3.9
134,719 + H281DRAFT_05715 0.73 -3.5
134,720 - H281DRAFT_05715 0.73 -2.6
134,720 - H281DRAFT_05715 0.73 -3.9
134,720 - H281DRAFT_05715 0.73 -2.6
134,743 + H281DRAFT_05715 0.75 -5.5
134,744 - H281DRAFT_05715 0.75 -5.6
134,869 - H281DRAFT_05715 0.83 -3.4
135,016 + -3.1
135,017 - -1.4
135,068 + -2.0
135,068 + -5.0
135,129 + -0.9
135,129 + -0.8
135,129 + -0.7
135,129 + -2.4
135,133 + -2.9
135,133 + -1.5
135,133 + -4.8
135,133 + -1.7
135,133 + -2.2
135,134 - +0.7
135,134 - -3.9
135,134 - -1.0
135,268 - -0.1
135,268 - +0.3
135,278 + +0.3
135,279 - +0.6
135,279 - +0.2
135,345 + -1.7
135,378 - +0.3
135,436 - +0.4
135,539 + -2.0
135,539 + -0.4
135,539 + -0.5
135,539 + +0.1
135,540 - -0.8
135,540 - -0.0
135,541 + +0.8
135,541 + -0.3
135,541 + -0.7
135,542 - +0.6
135,542 - -0.8
135,542 - +0.3
135,555 - H281DRAFT_05716 0.10 +0.5
135,565 + H281DRAFT_05716 0.12 -2.0
135,565 + H281DRAFT_05716 0.12 +0.8
135,566 - H281DRAFT_05716 0.12 +0.5
135,566 - H281DRAFT_05716 0.12 -0.5
135,582 + H281DRAFT_05716 0.14 -0.0
135,582 + H281DRAFT_05716 0.14 +0.3
135,583 - H281DRAFT_05716 0.14 +0.6
135,583 - H281DRAFT_05716 0.14 +0.9
135,583 - H281DRAFT_05716 0.14 -0.3
135,765 + H281DRAFT_05716 0.39 -0.7
135,766 - H281DRAFT_05716 0.40 +0.2
135,766 - H281DRAFT_05716 0.40 -0.3
135,781 - H281DRAFT_05716 0.42 +0.8
135,930 + H281DRAFT_05716 0.62 +0.3
135,931 - H281DRAFT_05716 0.63 +0.3
135,931 - H281DRAFT_05716 0.63 +0.3
136,004 + H281DRAFT_05716 0.73 +0.7
136,005 - H281DRAFT_05716 0.73 +0.0
136,005 - H281DRAFT_05716 0.73 +0.6
136,029 + H281DRAFT_05716 0.76 +1.8
136,396 - H281DRAFT_05717 0.26 -1.0
136,406 - H281DRAFT_05717 0.27 -1.6
136,406 - H281DRAFT_05717 0.27 -3.1
136,406 - H281DRAFT_05717 0.27 -1.6
136,511 + H281DRAFT_05717 0.42 -1.3
136,511 + H281DRAFT_05717 0.42 -0.4
136,512 - H281DRAFT_05717 0.42 -2.3
136,512 - H281DRAFT_05717 0.42 +0.2
136,715 + H281DRAFT_05717 0.70 -1.3
136,715 + H281DRAFT_05717 0.70 -3.4
136,716 - H281DRAFT_05717 0.70 +0.9
136,716 - H281DRAFT_05717 0.70 -1.7
136,716 - H281DRAFT_05717 0.70 -3.0
136,770 + H281DRAFT_05717 0.78 -3.8
136,770 + H281DRAFT_05717 0.78 -2.6
136,770 + H281DRAFT_05717 0.78 -1.4
136,770 + H281DRAFT_05717 0.78 +0.1
136,770 + H281DRAFT_05717 0.78 -2.8
136,771 - H281DRAFT_05717 0.78 -1.4
136,771 - H281DRAFT_05717 0.78 -1.4
136,771 - H281DRAFT_05717 0.78 -2.0
136,771 - H281DRAFT_05717 0.78 -4.8
136,771 - H281DRAFT_05717 0.78 -2.8
136,930 + +0.3
137,028 - +0.1
137,048 + -0.8
137,048 + +1.1
137,048 + +0.1
137,049 - -1.9
137,049 - -0.0
137,049 - -0.7
137,049 - -2.2
137,049 - -0.2

Or see this region's nucleotide sequence