Experiment: Valeric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05554 and H281DRAFT_05555 are separated by 330 nucleotides H281DRAFT_05555 and H281DRAFT_05556 are separated by 250 nucleotides
H281DRAFT_05554: H281DRAFT_05554 - hypothetical protein, at 143,280 to 143,915
_05554
H281DRAFT_05555: H281DRAFT_05555 - transcriptional regulator, MarR family with acetyltransferase activity, at 144,246 to 145,247
_05555
H281DRAFT_05556: H281DRAFT_05556 - 3-oxoacyl-[acyl-carrier protein] reductase, at 145,498 to 146,241
_05556
Position (kb) 144
145
146 Strain fitness (log2 ratio) -2
-1
0
1
2 at 143.256 kb on + strand at 143.310 kb on + strand at 143.310 kb on + strand at 143.316 kb on - strand at 143.379 kb on + strand, within H281DRAFT_05554 at 143.380 kb on - strand, within H281DRAFT_05554 at 143.448 kb on + strand, within H281DRAFT_05554 at 143.449 kb on - strand, within H281DRAFT_05554 at 143.492 kb on + strand, within H281DRAFT_05554 at 143.493 kb on - strand, within H281DRAFT_05554 at 143.515 kb on + strand, within H281DRAFT_05554 at 143.515 kb on + strand, within H281DRAFT_05554 at 143.659 kb on + strand, within H281DRAFT_05554 at 143.660 kb on - strand, within H281DRAFT_05554 at 143.660 kb on - strand, within H281DRAFT_05554 at 143.695 kb on + strand, within H281DRAFT_05554 at 143.696 kb on - strand, within H281DRAFT_05554 at 143.916 kb on - strand at 143.934 kb on - strand at 144.177 kb on + strand at 144.215 kb on + strand at 144.258 kb on - strand at 144.371 kb on - strand, within H281DRAFT_05555 at 144.373 kb on - strand, within H281DRAFT_05555 at 144.373 kb on - strand, within H281DRAFT_05555 at 144.413 kb on - strand, within H281DRAFT_05555 at 144.478 kb on - strand, within H281DRAFT_05555 at 144.689 kb on - strand, within H281DRAFT_05555 at 144.760 kb on + strand, within H281DRAFT_05555 at 144.763 kb on - strand, within H281DRAFT_05555 at 144.784 kb on - strand at 144.818 kb on - strand, within H281DRAFT_05555 at 145.059 kb on + strand, within H281DRAFT_05555 at 145.060 kb on - strand, within H281DRAFT_05555 at 145.371 kb on - strand at 145.425 kb on + strand at 145.425 kb on + strand at 145.426 kb on - strand at 145.440 kb on - strand at 145.440 kb on - strand at 145.440 kb on - strand at 145.440 kb on - strand at 145.477 kb on - strand at 145.517 kb on - strand at 145.517 kb on - strand at 145.550 kb on - strand at 145.551 kb on + strand at 145.551 kb on + strand at 145.750 kb on + strand at 145.751 kb on - strand, within H281DRAFT_05556 at 145.751 kb on - strand, within H281DRAFT_05556 at 145.827 kb on + strand, within H281DRAFT_05556 at 145.828 kb on - strand, within H281DRAFT_05556 at 146.119 kb on - strand, within H281DRAFT_05556
Per-strain Table
Position Strand Gene LocusTag Fraction Valeric (C) remove 143,256 + +0.3 143,310 + -0.4 143,310 + +0.1 143,316 - -0.6 143,379 + H281DRAFT_05554 0.16 -0.2 143,380 - H281DRAFT_05554 0.16 -0.3 143,448 + H281DRAFT_05554 0.26 -1.3 143,449 - H281DRAFT_05554 0.27 -0.4 143,492 + H281DRAFT_05554 0.33 +0.5 143,493 - H281DRAFT_05554 0.33 -0.9 143,515 + H281DRAFT_05554 0.37 -0.3 143,515 + H281DRAFT_05554 0.37 +0.4 143,659 + H281DRAFT_05554 0.60 +0.6 143,660 - H281DRAFT_05554 0.60 -0.2 143,660 - H281DRAFT_05554 0.60 +0.8 143,695 + H281DRAFT_05554 0.65 -0.4 143,696 - H281DRAFT_05554 0.65 -0.4 143,916 - -1.1 143,934 - +0.8 144,177 + +0.4 144,215 + +1.6 144,258 - -0.1 144,371 - H281DRAFT_05555 0.12 +0.7 144,373 - H281DRAFT_05555 0.13 -0.8 144,373 - H281DRAFT_05555 0.13 +2.0 144,413 - H281DRAFT_05555 0.17 +0.2 144,478 - H281DRAFT_05555 0.23 +0.4 144,689 - H281DRAFT_05555 0.44 +0.3 144,760 + H281DRAFT_05555 0.51 -0.2 144,763 - H281DRAFT_05555 0.52 +0.0 144,784 - +0.3 144,818 - H281DRAFT_05555 0.57 -0.7 145,059 + H281DRAFT_05555 0.81 -0.1 145,060 - H281DRAFT_05555 0.81 +0.1 145,371 - +0.8 145,425 + +0.1 145,425 + -0.3 145,426 - +0.1 145,440 - +0.3 145,440 - -0.1 145,440 - +0.5 145,440 - -0.4 145,477 - -1.9 145,517 - -0.3 145,517 - +0.0 145,550 - +0.5 145,551 + +0.9 145,551 + -0.3 145,750 + +2.5 145,751 - H281DRAFT_05556 0.34 -0.2 145,751 - H281DRAFT_05556 0.34 -0.3 145,827 + H281DRAFT_05556 0.44 +0.1 145,828 - H281DRAFT_05556 0.44 +0.4 146,119 - H281DRAFT_05556 0.83 +0.7
Or see this region's nucleotide sequence