Experiment: Valeric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05417 and H281DRAFT_05418 are separated by 47 nucleotides H281DRAFT_05418 and H281DRAFT_05419 are separated by 80 nucleotides H281DRAFT_05419 and H281DRAFT_05420 are separated by 51 nucleotides
H281DRAFT_05417: H281DRAFT_05417 - NADPH:quinone reductase, at 180,990 to 181,991
_05417
H281DRAFT_05418: H281DRAFT_05418 - Pimeloyl-ACP methyl ester carboxylesterase, at 182,039 to 182,944
_05418
H281DRAFT_05419: H281DRAFT_05419 - hypothetical protein, at 183,025 to 183,813
_05419
H281DRAFT_05420: H281DRAFT_05420 - N-ethylmaleimide reductase, at 183,865 to 184,947
_05420
Position (kb) 182
183 Strain fitness (log2 ratio) -2
-1
0
1
2 at 181.039 kb on + strand at 181.215 kb on + strand, within H281DRAFT_05417 at 181.216 kb on - strand, within H281DRAFT_05417 at 181.406 kb on + strand, within H281DRAFT_05417 at 181.406 kb on + strand, within H281DRAFT_05417 at 181.407 kb on - strand, within H281DRAFT_05417 at 181.809 kb on - strand, within H281DRAFT_05417 at 181.967 kb on - strand at 182.119 kb on - strand at 182.119 kb on - strand at 182.156 kb on - strand, within H281DRAFT_05418 at 182.371 kb on + strand at 182.395 kb on - strand, within H281DRAFT_05418 at 182.395 kb on - strand, within H281DRAFT_05418 at 182.395 kb on - strand, within H281DRAFT_05418 at 182.491 kb on + strand, within H281DRAFT_05418 at 182.682 kb on + strand, within H281DRAFT_05418 at 182.950 kb on + strand at 182.950 kb on + strand at 182.951 kb on - strand at 183.568 kb on + strand at 183.569 kb on - strand, within H281DRAFT_05419 at 183.574 kb on - strand, within H281DRAFT_05419 at 183.894 kb on - strand at 183.915 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Valeric (C) remove 181,039 + -0.3 181,215 + H281DRAFT_05417 0.22 +1.0 181,216 - H281DRAFT_05417 0.23 +0.7 181,406 + H281DRAFT_05417 0.42 -0.4 181,406 + H281DRAFT_05417 0.42 +0.2 181,407 - H281DRAFT_05417 0.42 +0.1 181,809 - H281DRAFT_05417 0.82 -0.3 181,967 - +0.7 182,119 - -0.0 182,119 - +0.1 182,156 - H281DRAFT_05418 0.13 +0.9 182,371 + +1.8 182,395 - H281DRAFT_05418 0.39 +0.7 182,395 - H281DRAFT_05418 0.39 +0.0 182,395 - H281DRAFT_05418 0.39 +1.0 182,491 + H281DRAFT_05418 0.50 +0.3 182,682 + H281DRAFT_05418 0.71 -1.7 182,950 + +1.2 182,950 + -0.2 182,951 - +0.2 183,568 + -1.5 183,569 - H281DRAFT_05419 0.69 +0.7 183,574 - H281DRAFT_05419 0.70 -1.9 183,894 - -0.2 183,915 - +0.2
Or see this region's nucleotide sequence