Experiment: Valeric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05336 and H281DRAFT_05337 are separated by 59 nucleotides H281DRAFT_05337 and H281DRAFT_05338 are separated by 127 nucleotides H281DRAFT_05338 and H281DRAFT_05339 are separated by 113 nucleotides
H281DRAFT_05336: H281DRAFT_05336 - transcriptional regulator, MerR family, at 86,976 to 87,833
_05336
H281DRAFT_05337: H281DRAFT_05337 - phosphinothricin acetyltransferase, at 87,893 to 88,501
_05337
H281DRAFT_05338: H281DRAFT_05338 - Permease of the drug/metabolite transporter (DMT) superfamily, at 88,629 to 89,516
_05338
H281DRAFT_05339: H281DRAFT_05339 - transcriptional regulator, GntR family, at 89,630 to 91,072
_05339
Position (kb) 88
89
90 Strain fitness (log2 ratio) -1
0
1 at 87.737 kb on - strand, within H281DRAFT_05336 at 87.828 kb on - strand at 87.857 kb on - strand at 87.903 kb on + strand at 88.024 kb on + strand, within H281DRAFT_05337 at 88.024 kb on + strand, within H281DRAFT_05337 at 88.164 kb on + strand, within H281DRAFT_05337 at 88.165 kb on - strand, within H281DRAFT_05337 at 88.165 kb on - strand, within H281DRAFT_05337 at 88.263 kb on + strand, within H281DRAFT_05337 at 88.369 kb on - strand, within H281DRAFT_05337 at 88.836 kb on + strand, within H281DRAFT_05338 at 88.836 kb on + strand, within H281DRAFT_05338 at 88.871 kb on - strand, within H281DRAFT_05338 at 88.980 kb on - strand, within H281DRAFT_05338 at 89.027 kb on - strand, within H281DRAFT_05338 at 89.478 kb on - strand at 89.547 kb on - strand at 89.547 kb on - strand at 89.549 kb on - strand at 89.575 kb on + strand at 89.682 kb on + strand at 90.083 kb on + strand, within H281DRAFT_05339 at 90.387 kb on - strand, within H281DRAFT_05339
Per-strain Table
Position Strand Gene LocusTag Fraction Valeric (C) remove 87,737 - H281DRAFT_05336 0.89 +0.2 87,828 - +0.3 87,857 - -0.9 87,903 + -1.1 88,024 + H281DRAFT_05337 0.22 +0.8 88,024 + H281DRAFT_05337 0.22 -0.8 88,164 + H281DRAFT_05337 0.44 +1.5 88,165 - H281DRAFT_05337 0.45 -0.5 88,165 - H281DRAFT_05337 0.45 -0.4 88,263 + H281DRAFT_05337 0.61 +0.4 88,369 - H281DRAFT_05337 0.78 -0.2 88,836 + H281DRAFT_05338 0.23 +0.4 88,836 + H281DRAFT_05338 0.23 +0.1 88,871 - H281DRAFT_05338 0.27 +0.6 88,980 - H281DRAFT_05338 0.40 -0.9 89,027 - H281DRAFT_05338 0.45 +0.2 89,478 - -0.1 89,547 - -0.2 89,547 - -1.6 89,549 - -1.3 89,575 + +0.0 89,682 + -0.1 90,083 + H281DRAFT_05339 0.31 -0.0 90,387 - H281DRAFT_05339 0.52 +1.0
Or see this region's nucleotide sequence