Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05161

Experiment: Valeric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05160 and H281DRAFT_05161 overlap by 4 nucleotidesH281DRAFT_05161 and H281DRAFT_05162 are separated by 368 nucleotides H281DRAFT_05160: H281DRAFT_05160 - allantoicase, at 113,631 to 114,644 _05160 H281DRAFT_05161: H281DRAFT_05161 - ureidoglycolate lyase, at 114,641 to 115,153 _05161 H281DRAFT_05162: H281DRAFT_05162 - Uncharacterized membrane protein, at 115,522 to 116,715 _05162 Position (kb) 114 115 116Strain fitness (log2 ratio) -2 -1 0 1at 113.796 kb on + strand, within H281DRAFT_05160at 114.026 kb on + strand, within H281DRAFT_05160at 114.051 kb on + strand, within H281DRAFT_05160at 114.081 kb on - strand, within H281DRAFT_05160at 114.081 kb on - strand, within H281DRAFT_05160at 114.081 kb on - strand, within H281DRAFT_05160at 114.081 kb on - strandat 114.136 kb on - strand, within H281DRAFT_05160at 114.231 kb on - strand, within H281DRAFT_05160at 114.409 kb on - strand, within H281DRAFT_05160at 114.409 kb on - strand, within H281DRAFT_05160at 114.438 kb on + strand, within H281DRAFT_05160at 114.439 kb on - strand, within H281DRAFT_05160at 114.535 kb on - strand, within H281DRAFT_05160at 115.275 kb on - strandat 115.275 kb on - strandat 115.280 kb on + strandat 115.426 kb on + strandat 115.427 kb on - strandat 115.492 kb on - strandat 115.631 kb on + strandat 115.632 kb on - strandat 115.668 kb on + strand, within H281DRAFT_05162at 115.669 kb on - strand, within H281DRAFT_05162at 115.871 kb on + strand, within H281DRAFT_05162at 115.871 kb on + strand, within H281DRAFT_05162at 115.872 kb on - strand, within H281DRAFT_05162at 115.961 kb on + strand, within H281DRAFT_05162at 115.962 kb on - strand, within H281DRAFT_05162at 115.973 kb on + strand, within H281DRAFT_05162at 115.974 kb on - strand, within H281DRAFT_05162at 115.974 kb on - strand, within H281DRAFT_05162at 116.027 kb on + strand, within H281DRAFT_05162at 116.066 kb on + strand, within H281DRAFT_05162

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Per-strain Table

Position Strand Gene LocusTag Fraction Valeric (C)
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113,796 + H281DRAFT_05160 0.16 -0.7
114,026 + H281DRAFT_05160 0.39 +0.6
114,051 + H281DRAFT_05160 0.41 -0.4
114,081 - H281DRAFT_05160 0.44 +0.4
114,081 - H281DRAFT_05160 0.44 -0.9
114,081 - H281DRAFT_05160 0.44 +0.5
114,081 - -1.1
114,136 - H281DRAFT_05160 0.50 -2.7
114,231 - H281DRAFT_05160 0.59 -0.7
114,409 - H281DRAFT_05160 0.77 +0.0
114,409 - H281DRAFT_05160 0.77 -1.4
114,438 + H281DRAFT_05160 0.80 +0.3
114,439 - H281DRAFT_05160 0.80 -0.4
114,535 - H281DRAFT_05160 0.89 -0.3
115,275 - -0.6
115,275 - +1.0
115,280 + +0.1
115,426 + -0.2
115,427 - -0.8
115,492 - +0.9
115,631 + -0.5
115,632 - +1.5
115,668 + H281DRAFT_05162 0.12 +0.7
115,669 - H281DRAFT_05162 0.12 -0.5
115,871 + H281DRAFT_05162 0.29 -1.0
115,871 + H281DRAFT_05162 0.29 -0.8
115,872 - H281DRAFT_05162 0.29 -0.0
115,961 + H281DRAFT_05162 0.37 +0.7
115,962 - H281DRAFT_05162 0.37 -1.8
115,973 + H281DRAFT_05162 0.38 -0.8
115,974 - H281DRAFT_05162 0.38 +0.2
115,974 - H281DRAFT_05162 0.38 -0.9
116,027 + H281DRAFT_05162 0.42 +0.6
116,066 + H281DRAFT_05162 0.46 -0.5

Or see this region's nucleotide sequence