Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04289

Experiment: Valeric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04287 and H281DRAFT_04288 are separated by 165 nucleotidesH281DRAFT_04288 and H281DRAFT_04289 are separated by 85 nucleotidesH281DRAFT_04289 and H281DRAFT_04290 are separated by 21 nucleotidesH281DRAFT_04290 and H281DRAFT_04291 are separated by 241 nucleotides H281DRAFT_04287: H281DRAFT_04287 - D-amino-acid dehydrogenase, at 3,227 to 4,543 _04287 H281DRAFT_04288: H281DRAFT_04288 - transcriptional regulator, AsnC family, at 4,709 to 5,209 _04288 H281DRAFT_04289: H281DRAFT_04289 - DNA repair photolyase, at 5,295 to 6,440 _04289 H281DRAFT_04290: H281DRAFT_04290 - TM2 domain-containing membrane protein YozV, at 6,462 to 6,929 _04290 H281DRAFT_04291: H281DRAFT_04291 - hypothetical protein, at 7,171 to 8,340 _04291 Position (kb) 5 6 7Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 4.494 kb on + strandat 4.495 kb on - strandat 4.495 kb on - strandat 4.495 kb on - strandat 4.543 kb on + strandat 4.544 kb on - strandat 4.544 kb on - strandat 4.589 kb on + strandat 4.649 kb on + strandat 4.650 kb on - strandat 4.650 kb on - strandat 4.650 kb on - strandat 4.652 kb on + strandat 4.652 kb on + strandat 4.652 kb on + strandat 4.652 kb on + strandat 4.653 kb on - strandat 4.676 kb on + strandat 4.676 kb on + strandat 4.714 kb on + strandat 4.714 kb on + strandat 4.715 kb on - strandat 4.889 kb on + strand, within H281DRAFT_04288at 4.890 kb on - strand, within H281DRAFT_04288at 4.890 kb on - strand, within H281DRAFT_04288at 4.932 kb on + strand, within H281DRAFT_04288at 5.049 kb on - strand, within H281DRAFT_04288at 5.049 kb on - strand, within H281DRAFT_04288at 5.144 kb on + strand, within H281DRAFT_04288at 5.144 kb on + strand, within H281DRAFT_04288at 5.145 kb on - strand, within H281DRAFT_04288at 5.207 kb on + strandat 5.207 kb on + strandat 5.208 kb on - strandat 5.280 kb on - strandat 5.280 kb on - strandat 5.291 kb on - strandat 5.416 kb on + strand, within H281DRAFT_04289at 5.471 kb on + strand, within H281DRAFT_04289at 5.472 kb on - strand, within H281DRAFT_04289at 5.472 kb on - strand, within H281DRAFT_04289at 5.472 kb on - strand, within H281DRAFT_04289at 5.516 kb on + strand, within H281DRAFT_04289at 5.516 kb on + strand, within H281DRAFT_04289at 5.516 kb on + strand, within H281DRAFT_04289at 5.516 kb on + strand, within H281DRAFT_04289at 5.517 kb on - strand, within H281DRAFT_04289at 5.517 kb on - strand, within H281DRAFT_04289at 5.517 kb on - strand, within H281DRAFT_04289at 5.517 kb on - strand, within H281DRAFT_04289at 5.579 kb on + strand, within H281DRAFT_04289at 5.579 kb on + strand, within H281DRAFT_04289at 5.579 kb on + strand, within H281DRAFT_04289at 5.579 kb on + strandat 5.579 kb on + strand, within H281DRAFT_04289at 5.580 kb on - strand, within H281DRAFT_04289at 5.580 kb on - strand, within H281DRAFT_04289at 5.580 kb on - strand, within H281DRAFT_04289at 5.580 kb on - strand, within H281DRAFT_04289at 5.583 kb on + strand, within H281DRAFT_04289at 5.583 kb on + strand, within H281DRAFT_04289at 5.584 kb on - strand, within H281DRAFT_04289at 5.610 kb on + strand, within H281DRAFT_04289at 5.610 kb on + strand, within H281DRAFT_04289at 5.610 kb on + strand, within H281DRAFT_04289at 5.611 kb on - strand, within H281DRAFT_04289at 5.611 kb on - strand, within H281DRAFT_04289at 5.611 kb on - strand, within H281DRAFT_04289at 5.611 kb on - strand, within H281DRAFT_04289at 5.652 kb on + strand, within H281DRAFT_04289at 5.652 kb on + strand, within H281DRAFT_04289at 5.652 kb on + strand, within H281DRAFT_04289at 5.652 kb on + strand, within H281DRAFT_04289at 5.652 kb on + strand, within H281DRAFT_04289at 5.652 kb on + strand, within H281DRAFT_04289at 5.653 kb on - strand, within H281DRAFT_04289at 5.706 kb on + strand, within H281DRAFT_04289at 5.802 kb on - strand, within H281DRAFT_04289at 5.802 kb on - strand, within H281DRAFT_04289at 5.876 kb on + strandat 5.897 kb on + strand, within H281DRAFT_04289at 5.897 kb on + strand, within H281DRAFT_04289at 5.919 kb on - strand, within H281DRAFT_04289at 5.923 kb on + strand, within H281DRAFT_04289at 5.923 kb on + strand, within H281DRAFT_04289at 5.924 kb on - strand, within H281DRAFT_04289at 5.942 kb on + strand, within H281DRAFT_04289at 6.117 kb on + strand, within H281DRAFT_04289at 6.118 kb on - strand, within H281DRAFT_04289at 6.118 kb on - strand, within H281DRAFT_04289at 6.119 kb on + strand, within H281DRAFT_04289at 6.233 kb on + strand, within H281DRAFT_04289at 6.233 kb on + strand, within H281DRAFT_04289at 6.234 kb on - strand, within H281DRAFT_04289at 6.241 kb on - strand, within H281DRAFT_04289at 6.363 kb on - strandat 6.439 kb on - strandat 6.506 kb on - strandat 6.582 kb on + strand, within H281DRAFT_04290at 6.583 kb on - strand, within H281DRAFT_04290at 6.583 kb on - strand, within H281DRAFT_04290at 6.662 kb on - strand, within H281DRAFT_04290at 6.826 kb on + strand, within H281DRAFT_04290at 6.826 kb on + strand, within H281DRAFT_04290at 6.832 kb on + strand, within H281DRAFT_04290at 6.832 kb on + strand, within H281DRAFT_04290at 6.885 kb on - strandat 6.885 kb on - strandat 6.885 kb on - strandat 6.902 kb on - strandat 6.931 kb on + strandat 6.932 kb on - strandat 6.932 kb on - strandat 6.932 kb on - strandat 6.932 kb on - strandat 6.932 kb on - strandat 6.932 kb on - strandat 6.932 kb on - strandat 6.946 kb on + strandat 6.946 kb on + strandat 7.024 kb on + strandat 7.024 kb on + strandat 7.025 kb on - strandat 7.025 kb on - strandat 7.057 kb on - strandat 7.184 kb on + strandat 7.184 kb on + strandat 7.185 kb on - strandat 7.185 kb on - strandat 7.185 kb on - strandat 7.196 kb on + strandat 7.196 kb on + strandat 7.197 kb on - strandat 7.197 kb on - strandat 7.197 kb on - strandat 7.200 kb on + strandat 7.200 kb on + strandat 7.200 kb on + strandat 7.201 kb on - strandat 7.212 kb on - strandat 7.225 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Valeric (C)
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4,494 + +0.2
4,495 - -0.4
4,495 - -1.3
4,495 - -0.4
4,543 + -0.4
4,544 - -0.4
4,544 - +0.7
4,589 + -0.3
4,649 + +1.0
4,650 - -2.2
4,650 - -0.7
4,650 - +0.1
4,652 + -0.0
4,652 + +0.2
4,652 + -0.6
4,652 + -0.5
4,653 - +1.1
4,676 + +0.6
4,676 + +1.4
4,714 + +0.4
4,714 + +0.5
4,715 - -0.3
4,889 + H281DRAFT_04288 0.36 +1.2
4,890 - H281DRAFT_04288 0.36 -0.4
4,890 - H281DRAFT_04288 0.36 -1.0
4,932 + H281DRAFT_04288 0.45 -1.1
5,049 - H281DRAFT_04288 0.68 -0.2
5,049 - H281DRAFT_04288 0.68 +0.3
5,144 + H281DRAFT_04288 0.87 -1.2
5,144 + H281DRAFT_04288 0.87 -0.2
5,145 - H281DRAFT_04288 0.87 -0.7
5,207 + -0.2
5,207 + -0.2
5,208 - +1.0
5,280 - +0.2
5,280 - +0.5
5,291 - -0.4
5,416 + H281DRAFT_04289 0.11 -0.5
5,471 + H281DRAFT_04289 0.15 +0.5
5,472 - H281DRAFT_04289 0.15 +0.8
5,472 - H281DRAFT_04289 0.15 -2.5
5,472 - H281DRAFT_04289 0.15 +0.4
5,516 + H281DRAFT_04289 0.19 -0.2
5,516 + H281DRAFT_04289 0.19 +0.3
5,516 + H281DRAFT_04289 0.19 +0.6
5,516 + H281DRAFT_04289 0.19 +0.2
5,517 - H281DRAFT_04289 0.19 +0.5
5,517 - H281DRAFT_04289 0.19 -0.9
5,517 - H281DRAFT_04289 0.19 +0.6
5,517 - H281DRAFT_04289 0.19 +0.5
5,579 + H281DRAFT_04289 0.25 +0.3
5,579 + H281DRAFT_04289 0.25 -4.9
5,579 + H281DRAFT_04289 0.25 -1.5
5,579 + +0.6
5,579 + H281DRAFT_04289 0.25 +0.1
5,580 - H281DRAFT_04289 0.25 +1.5
5,580 - H281DRAFT_04289 0.25 +1.0
5,580 - H281DRAFT_04289 0.25 +0.1
5,580 - H281DRAFT_04289 0.25 -0.3
5,583 + H281DRAFT_04289 0.25 +0.0
5,583 + H281DRAFT_04289 0.25 -1.7
5,584 - H281DRAFT_04289 0.25 +0.6
5,610 + H281DRAFT_04289 0.27 -1.0
5,610 + H281DRAFT_04289 0.27 +0.0
5,610 + H281DRAFT_04289 0.27 +0.1
5,611 - H281DRAFT_04289 0.28 +0.8
5,611 - H281DRAFT_04289 0.28 +0.3
5,611 - H281DRAFT_04289 0.28 +1.4
5,611 - H281DRAFT_04289 0.28 -0.0
5,652 + H281DRAFT_04289 0.31 -0.9
5,652 + H281DRAFT_04289 0.31 +1.3
5,652 + H281DRAFT_04289 0.31 +0.7
5,652 + H281DRAFT_04289 0.31 -0.0
5,652 + H281DRAFT_04289 0.31 +0.4
5,652 + H281DRAFT_04289 0.31 -1.3
5,653 - H281DRAFT_04289 0.31 +0.1
5,706 + H281DRAFT_04289 0.36 +1.1
5,802 - H281DRAFT_04289 0.44 -0.7
5,802 - H281DRAFT_04289 0.44 +0.3
5,876 + +1.0
5,897 + H281DRAFT_04289 0.53 -0.4
5,897 + H281DRAFT_04289 0.53 -0.7
5,919 - H281DRAFT_04289 0.54 -1.2
5,923 + H281DRAFT_04289 0.55 +0.4
5,923 + H281DRAFT_04289 0.55 -0.1
5,924 - H281DRAFT_04289 0.55 -0.6
5,942 + H281DRAFT_04289 0.56 -0.3
6,117 + H281DRAFT_04289 0.72 -0.3
6,118 - H281DRAFT_04289 0.72 +0.8
6,118 - H281DRAFT_04289 0.72 -0.0
6,119 + H281DRAFT_04289 0.72 +0.0
6,233 + H281DRAFT_04289 0.82 +0.6
6,233 + H281DRAFT_04289 0.82 -0.1
6,234 - H281DRAFT_04289 0.82 +0.1
6,241 - H281DRAFT_04289 0.83 +0.0
6,363 - +0.1
6,439 - -1.8
6,506 - -0.4
6,582 + H281DRAFT_04290 0.26 +2.9
6,583 - H281DRAFT_04290 0.26 +0.8
6,583 - H281DRAFT_04290 0.26 +0.0
6,662 - H281DRAFT_04290 0.43 +1.9
6,826 + H281DRAFT_04290 0.78 -0.1
6,826 + H281DRAFT_04290 0.78 -1.1
6,832 + H281DRAFT_04290 0.79 -0.5
6,832 + H281DRAFT_04290 0.79 -1.4
6,885 - -0.6
6,885 - +0.3
6,885 - -0.1
6,902 - +0.9
6,931 + -0.4
6,932 - +0.5
6,932 - +0.1
6,932 - +0.0
6,932 - +0.4
6,932 - +0.2
6,932 - +1.2
6,932 - -0.3
6,946 + -0.4
6,946 + +0.9
7,024 + +0.2
7,024 + -0.5
7,025 - +0.4
7,025 - -0.6
7,057 - -0.2
7,184 + -0.1
7,184 + -1.1
7,185 - -1.0
7,185 - +0.5
7,185 - +0.3
7,196 + -0.5
7,196 + +0.8
7,197 - -0.2
7,197 - -1.6
7,197 - -0.7
7,200 + -0.3
7,200 + +0.2
7,200 + +1.4
7,201 - +0.4
7,212 - -0.4
7,225 - +0.0

Or see this region's nucleotide sequence