Experiment: Valeric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04240 and H281DRAFT_04241 are separated by 91 nucleotides H281DRAFT_04241 and H281DRAFT_04242 are separated by 19 nucleotides H281DRAFT_04242 and H281DRAFT_04243 are separated by 92 nucleotides
H281DRAFT_04240: H281DRAFT_04240 - phosphate starvation-inducible protein PhoH, at 358,775 to 359,848
_04240
H281DRAFT_04241: H281DRAFT_04241 - probable rRNA maturation factor, at 359,940 to 360,401
_04241
H281DRAFT_04242: H281DRAFT_04242 - cation transport protein ChaC, at 360,421 to 361,134
_04242
H281DRAFT_04243: H281DRAFT_04243 - magnesium and cobalt transporter, at 361,227 to 362,258
_04243
Position (kb) 359
360
361 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 358.973 kb on + strand, within H281DRAFT_04240 at 359.177 kb on + strand, within H281DRAFT_04240 at 359.177 kb on + strand, within H281DRAFT_04240 at 359.177 kb on + strand, within H281DRAFT_04240 at 359.225 kb on + strand, within H281DRAFT_04240 at 359.291 kb on + strand, within H281DRAFT_04240 at 359.453 kb on + strand, within H281DRAFT_04240 at 359.453 kb on + strand, within H281DRAFT_04240 at 359.454 kb on - strand, within H281DRAFT_04240 at 359.525 kb on + strand, within H281DRAFT_04240 at 359.525 kb on + strand, within H281DRAFT_04240 at 359.724 kb on + strand, within H281DRAFT_04240 at 359.724 kb on + strand, within H281DRAFT_04240 at 359.725 kb on - strand, within H281DRAFT_04240 at 360.399 kb on + strand at 360.399 kb on + strand at 360.399 kb on + strand at 360.399 kb on + strand at 360.469 kb on + strand at 360.566 kb on + strand, within H281DRAFT_04242 at 360.566 kb on + strand, within H281DRAFT_04242 at 360.567 kb on - strand, within H281DRAFT_04242 at 360.567 kb on - strand, within H281DRAFT_04242 at 360.567 kb on - strand, within H281DRAFT_04242 at 360.662 kb on - strand, within H281DRAFT_04242 at 360.662 kb on - strand, within H281DRAFT_04242 at 360.662 kb on - strand, within H281DRAFT_04242 at 360.910 kb on + strand, within H281DRAFT_04242 at 360.911 kb on - strand, within H281DRAFT_04242 at 360.988 kb on + strand, within H281DRAFT_04242 at 360.988 kb on + strand, within H281DRAFT_04242 at 360.989 kb on - strand, within H281DRAFT_04242 at 360.989 kb on - strand, within H281DRAFT_04242 at 360.989 kb on - strand, within H281DRAFT_04242 at 361.052 kb on + strand, within H281DRAFT_04242 at 361.129 kb on - strand at 361.153 kb on + strand at 361.215 kb on + strand at 361.315 kb on + strand at 361.315 kb on + strand at 361.321 kb on + strand at 361.321 kb on + strand at 361.361 kb on + strand, within H281DRAFT_04243 at 361.361 kb on + strand, within H281DRAFT_04243 at 361.377 kb on + strand, within H281DRAFT_04243 at 361.377 kb on + strand, within H281DRAFT_04243 at 361.377 kb on + strand, within H281DRAFT_04243
Per-strain Table
Position Strand Gene LocusTag Fraction Valeric (C) remove 358,973 + H281DRAFT_04240 0.18 -0.0 359,177 + H281DRAFT_04240 0.37 +2.1 359,177 + H281DRAFT_04240 0.37 +0.3 359,177 + H281DRAFT_04240 0.37 -0.4 359,225 + H281DRAFT_04240 0.42 +0.6 359,291 + H281DRAFT_04240 0.48 -0.1 359,453 + H281DRAFT_04240 0.63 -0.8 359,453 + H281DRAFT_04240 0.63 +0.2 359,454 - H281DRAFT_04240 0.63 -0.1 359,525 + H281DRAFT_04240 0.70 -0.6 359,525 + H281DRAFT_04240 0.70 -1.6 359,724 + H281DRAFT_04240 0.88 -0.8 359,724 + H281DRAFT_04240 0.88 +0.5 359,725 - H281DRAFT_04240 0.88 -1.2 360,399 + -0.4 360,399 + -0.3 360,399 + +0.6 360,399 + -1.1 360,469 + +1.6 360,566 + H281DRAFT_04242 0.20 -3.7 360,566 + H281DRAFT_04242 0.20 +0.3 360,567 - H281DRAFT_04242 0.20 -0.6 360,567 - H281DRAFT_04242 0.20 -0.2 360,567 - H281DRAFT_04242 0.20 -0.6 360,662 - H281DRAFT_04242 0.34 -0.9 360,662 - H281DRAFT_04242 0.34 +0.8 360,662 - H281DRAFT_04242 0.34 -1.3 360,910 + H281DRAFT_04242 0.68 -1.2 360,911 - H281DRAFT_04242 0.69 -0.4 360,988 + H281DRAFT_04242 0.79 -0.3 360,988 + H281DRAFT_04242 0.79 -0.3 360,989 - H281DRAFT_04242 0.80 +0.3 360,989 - H281DRAFT_04242 0.80 -0.1 360,989 - H281DRAFT_04242 0.80 +0.9 361,052 + H281DRAFT_04242 0.88 -3.0 361,129 - -2.3 361,153 + +1.0 361,215 + +0.6 361,315 + -0.4 361,315 + -1.1 361,321 + -0.6 361,321 + -2.2 361,361 + H281DRAFT_04243 0.13 +0.1 361,361 + H281DRAFT_04243 0.13 +0.2 361,377 + H281DRAFT_04243 0.15 -1.6 361,377 + H281DRAFT_04243 0.15 -1.7 361,377 + H281DRAFT_04243 0.15 -2.8
Or see this region's nucleotide sequence