Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04150

Experiment: Valeric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04149 and H281DRAFT_04150 are separated by 64 nucleotidesH281DRAFT_04150 and H281DRAFT_04151 are separated by 123 nucleotides H281DRAFT_04149: H281DRAFT_04149 - monosaccharide ABC transporter ATP-binding protein, CUT2 family, at 259,383 to 260,903 _04149 H281DRAFT_04150: H281DRAFT_04150 - monosaccharide ABC transporter substrate-binding protein, CUT2 family, at 260,968 to 261,921 _04150 H281DRAFT_04151: H281DRAFT_04151 - transcriptional regulator, AraC family, at 262,045 to 263,025 _04151 Position (kb) 260 261 262Strain fitness (log2 ratio) -3 -2 -1 0 1at 260.283 kb on + strand, within H281DRAFT_04149at 260.871 kb on - strandat 261.347 kb on - strand, within H281DRAFT_04150at 261.461 kb on - strand, within H281DRAFT_04150at 261.464 kb on + strand, within H281DRAFT_04150at 261.465 kb on - strand, within H281DRAFT_04150at 261.886 kb on - strandat 262.039 kb on + strandat 262.046 kb on + strandat 262.340 kb on + strand, within H281DRAFT_04151

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Per-strain Table

Position Strand Gene LocusTag Fraction Valeric (C)
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260,283 + H281DRAFT_04149 0.59 +0.7
260,871 - -0.0
261,347 - H281DRAFT_04150 0.40 -0.4
261,461 - H281DRAFT_04150 0.52 +1.2
261,464 + H281DRAFT_04150 0.52 -1.4
261,465 - H281DRAFT_04150 0.52 +0.8
261,886 - -3.4
262,039 + -0.3
262,046 + +0.5
262,340 + H281DRAFT_04151 0.30 +0.5

Or see this region's nucleotide sequence