Experiment: Valeric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04092 and H281DRAFT_04093 overlap by 4 nucleotides H281DRAFT_04093 and H281DRAFT_04094 overlap by 4 nucleotides H281DRAFT_04094 and H281DRAFT_04095 are separated by 246 nucleotides H281DRAFT_04095 and H281DRAFT_04096 are separated by 133 nucleotides
H281DRAFT_04092: H281DRAFT_04092 - peptide/nickel transport system permease protein, at 199,039 to 200,046
_04092
H281DRAFT_04093: H281DRAFT_04093 - peptide/nickel transport system permease protein, at 200,043 to 200,912
_04093
H281DRAFT_04094: H281DRAFT_04094 - peptide/nickel transport system ATP-binding protein, at 200,909 to 203,143
_04094
H281DRAFT_04095: H281DRAFT_04095 - hypothetical protein, at 203,390 to 203,872
_04095
H281DRAFT_04096: H281DRAFT_04096 - Aldo/keto reductase, at 204,006 to 204,851
_04096
Position (kb) 200
201
202
203
204 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 199.969 kb on + strand at 200.208 kb on + strand, within H281DRAFT_04093 at 200.374 kb on + strand, within H281DRAFT_04093 at 200.374 kb on + strand, within H281DRAFT_04093 at 200.374 kb on + strand, within H281DRAFT_04093 at 200.512 kb on + strand, within H281DRAFT_04093 at 201.002 kb on + strand at 201.003 kb on - strand at 201.003 kb on - strand at 201.153 kb on + strand, within H281DRAFT_04094 at 201.153 kb on + strand, within H281DRAFT_04094 at 201.410 kb on + strand, within H281DRAFT_04094 at 201.590 kb on - strand, within H281DRAFT_04094 at 201.824 kb on + strand, within H281DRAFT_04094 at 201.825 kb on - strand, within H281DRAFT_04094 at 201.926 kb on + strand, within H281DRAFT_04094 at 202.613 kb on + strand, within H281DRAFT_04094 at 202.649 kb on + strand, within H281DRAFT_04094 at 202.650 kb on - strand, within H281DRAFT_04094 at 202.739 kb on + strand, within H281DRAFT_04094 at 202.740 kb on - strand, within H281DRAFT_04094 at 202.741 kb on + strand, within H281DRAFT_04094 at 202.934 kb on + strand at 202.934 kb on + strand at 202.935 kb on - strand at 202.935 kb on - strand at 202.935 kb on - strand at 202.935 kb on - strand at 202.969 kb on + strand at 203.035 kb on - strand at 203.147 kb on + strand at 203.148 kb on - strand at 203.148 kb on - strand at 203.322 kb on - strand at 203.322 kb on - strand at 203.322 kb on - strand at 203.355 kb on - strand at 203.364 kb on + strand at 203.365 kb on - strand at 203.374 kb on - strand at 203.926 kb on + strand at 203.926 kb on + strand at 203.983 kb on + strand at 203.983 kb on + strand at 204.050 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Valeric (C) remove 199,969 + +0.3 200,208 + H281DRAFT_04093 0.19 -0.2 200,374 + H281DRAFT_04093 0.38 -1.1 200,374 + H281DRAFT_04093 0.38 -1.7 200,374 + H281DRAFT_04093 0.38 -0.1 200,512 + H281DRAFT_04093 0.54 +0.2 201,002 + -0.1 201,003 - -0.4 201,003 - -0.2 201,153 + H281DRAFT_04094 0.11 -1.2 201,153 + H281DRAFT_04094 0.11 -0.6 201,410 + H281DRAFT_04094 0.22 -1.6 201,590 - H281DRAFT_04094 0.30 -0.2 201,824 + H281DRAFT_04094 0.41 +0.4 201,825 - H281DRAFT_04094 0.41 +0.8 201,926 + H281DRAFT_04094 0.46 -0.8 202,613 + H281DRAFT_04094 0.76 +0.2 202,649 + H281DRAFT_04094 0.78 -0.2 202,650 - H281DRAFT_04094 0.78 -0.3 202,739 + H281DRAFT_04094 0.82 -0.1 202,740 - H281DRAFT_04094 0.82 +0.5 202,741 + H281DRAFT_04094 0.82 +0.2 202,934 + +1.0 202,934 + +0.6 202,935 - -0.7 202,935 - -4.5 202,935 - -0.6 202,935 - -0.0 202,969 + -0.2 203,035 - -0.1 203,147 + +0.7 203,148 - -0.8 203,148 - +0.6 203,322 - +1.3 203,322 - -0.5 203,322 - +0.7 203,355 - +1.3 203,364 + +0.5 203,365 - +1.3 203,374 - +0.8 203,926 + -1.7 203,926 + -0.4 203,983 + -0.5 203,983 + -0.3 204,050 - +0.4
Or see this region's nucleotide sequence