Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_03908

Experiment: Valeric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_03907 and H281DRAFT_03908 overlap by 35 nucleotidesH281DRAFT_03908 and H281DRAFT_03909 are separated by 55 nucleotides H281DRAFT_03907: H281DRAFT_03907 - Lysophospholipase, alpha-beta hydrolase superfamily, at 3,622 to 4,575 _03907 H281DRAFT_03908: H281DRAFT_03908 - Enoyl-CoA hydratase/carnithine racemase, at 4,541 to 5,341 _03908 H281DRAFT_03909: H281DRAFT_03909 - Acetoin utilization deacetylase AcuC, at 5,397 to 6,371 _03909 Position (kb) 4 5 6Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 3.731 kb on - strand, within H281DRAFT_03907at 3.746 kb on + strand, within H281DRAFT_03907at 3.747 kb on - strand, within H281DRAFT_03907at 3.747 kb on - strand, within H281DRAFT_03907at 3.747 kb on - strand, within H281DRAFT_03907at 3.747 kb on - strand, within H281DRAFT_03907at 3.747 kb on - strand, within H281DRAFT_03907at 3.898 kb on + strand, within H281DRAFT_03907at 3.898 kb on + strand, within H281DRAFT_03907at 3.898 kb on + strand, within H281DRAFT_03907at 3.898 kb on + strand, within H281DRAFT_03907at 3.898 kb on + strand, within H281DRAFT_03907at 3.899 kb on - strand, within H281DRAFT_03907at 3.899 kb on - strand, within H281DRAFT_03907at 3.919 kb on + strand, within H281DRAFT_03907at 3.919 kb on + strand, within H281DRAFT_03907at 3.941 kb on + strand, within H281DRAFT_03907at 3.996 kb on + strand, within H281DRAFT_03907at 3.996 kb on + strandat 3.996 kb on + strand, within H281DRAFT_03907at 4.024 kb on + strand, within H281DRAFT_03907at 4.025 kb on - strand, within H281DRAFT_03907at 4.444 kb on + strand, within H281DRAFT_03907at 4.444 kb on + strand, within H281DRAFT_03907at 4.445 kb on - strand, within H281DRAFT_03907at 4.726 kb on + strand, within H281DRAFT_03908at 4.727 kb on - strand, within H281DRAFT_03908at 4.966 kb on + strand, within H281DRAFT_03908at 4.966 kb on + strand, within H281DRAFT_03908at 4.966 kb on + strand, within H281DRAFT_03908at 4.967 kb on - strand, within H281DRAFT_03908at 5.082 kb on + strand, within H281DRAFT_03908at 5.085 kb on + strand, within H281DRAFT_03908at 5.289 kb on + strandat 5.378 kb on + strandat 5.458 kb on + strandat 5.459 kb on - strandat 5.515 kb on - strand, within H281DRAFT_03909at 5.540 kb on - strand, within H281DRAFT_03909at 5.540 kb on - strand, within H281DRAFT_03909at 5.715 kb on - strand, within H281DRAFT_03909at 5.715 kb on - strand, within H281DRAFT_03909at 5.715 kb on - strand, within H281DRAFT_03909at 6.036 kb on + strand, within H281DRAFT_03909at 6.053 kb on + strand, within H281DRAFT_03909at 6.121 kb on + strand, within H281DRAFT_03909at 6.150 kb on + strand, within H281DRAFT_03909at 6.150 kb on + strand, within H281DRAFT_03909at 6.150 kb on + strand, within H281DRAFT_03909at 6.150 kb on + strand, within H281DRAFT_03909at 6.151 kb on - strand, within H281DRAFT_03909at 6.304 kb on + strandat 6.304 kb on + strandat 6.305 kb on - strandat 6.305 kb on - strandat 6.305 kb on - strandat 6.305 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Valeric (C)
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3,731 - H281DRAFT_03907 0.11 -0.2
3,746 + H281DRAFT_03907 0.13 +0.3
3,747 - H281DRAFT_03907 0.13 +0.0
3,747 - H281DRAFT_03907 0.13 -0.5
3,747 - H281DRAFT_03907 0.13 +0.5
3,747 - H281DRAFT_03907 0.13 +0.7
3,747 - H281DRAFT_03907 0.13 +0.4
3,898 + H281DRAFT_03907 0.29 -0.4
3,898 + H281DRAFT_03907 0.29 +0.3
3,898 + H281DRAFT_03907 0.29 +0.3
3,898 + H281DRAFT_03907 0.29 +1.4
3,898 + H281DRAFT_03907 0.29 -0.6
3,899 - H281DRAFT_03907 0.29 +0.6
3,899 - H281DRAFT_03907 0.29 -0.1
3,919 + H281DRAFT_03907 0.31 +0.2
3,919 + H281DRAFT_03907 0.31 +0.1
3,941 + H281DRAFT_03907 0.33 -1.8
3,996 + H281DRAFT_03907 0.39 +1.5
3,996 + +2.9
3,996 + H281DRAFT_03907 0.39 -0.1
4,024 + H281DRAFT_03907 0.42 +0.7
4,025 - H281DRAFT_03907 0.42 -1.4
4,444 + H281DRAFT_03907 0.86 +0.2
4,444 + H281DRAFT_03907 0.86 -0.1
4,445 - H281DRAFT_03907 0.86 +0.1
4,726 + H281DRAFT_03908 0.23 +0.5
4,727 - H281DRAFT_03908 0.23 -0.3
4,966 + H281DRAFT_03908 0.53 +0.3
4,966 + H281DRAFT_03908 0.53 +0.2
4,966 + H281DRAFT_03908 0.53 -0.2
4,967 - H281DRAFT_03908 0.53 +1.1
5,082 + H281DRAFT_03908 0.68 +0.0
5,085 + H281DRAFT_03908 0.68 +0.6
5,289 + +0.7
5,378 + -1.4
5,458 + -0.3
5,459 - -2.9
5,515 - H281DRAFT_03909 0.12 -1.0
5,540 - H281DRAFT_03909 0.15 -1.0
5,540 - H281DRAFT_03909 0.15 -3.2
5,715 - H281DRAFT_03909 0.33 -4.5
5,715 - H281DRAFT_03909 0.33 -2.9
5,715 - H281DRAFT_03909 0.33 -2.8
6,036 + H281DRAFT_03909 0.66 -2.5
6,053 + H281DRAFT_03909 0.67 -1.0
6,121 + H281DRAFT_03909 0.74 -4.4
6,150 + H281DRAFT_03909 0.77 -1.4
6,150 + H281DRAFT_03909 0.77 -1.0
6,150 + H281DRAFT_03909 0.77 -1.4
6,150 + H281DRAFT_03909 0.77 -1.6
6,151 - H281DRAFT_03909 0.77 -2.8
6,304 + -1.9
6,304 + -3.8
6,305 - -2.1
6,305 - -2.7
6,305 - -2.3
6,305 - -2.9

Or see this region's nucleotide sequence