Experiment: Valeric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03391 and H281DRAFT_03392 are separated by 359 nucleotides H281DRAFT_03392 and H281DRAFT_03393 are separated by 420 nucleotides
H281DRAFT_03391: H281DRAFT_03391 - DNA-binding transcriptional regulator, LysR family, at 459,627 to 460,595
_03391
H281DRAFT_03392: H281DRAFT_03392 - pyruvate dehydrogenase (quinone), at 460,955 to 462,676
_03392
H281DRAFT_03393: H281DRAFT_03393 - Uncharacterized conserved protein, at 463,097 to 463,534
_03393
Position (kb) 460
461
462
463 Strain fitness (log2 ratio) -2
-1
0
1
2 at 460.399 kb on + strand, within H281DRAFT_03391 at 460.400 kb on - strand, within H281DRAFT_03391 at 460.657 kb on + strand at 460.657 kb on + strand at 460.657 kb on + strand at 460.658 kb on - strand at 460.658 kb on - strand at 460.736 kb on + strand at 460.789 kb on + strand at 460.835 kb on + strand at 460.960 kb on + strand at 460.979 kb on + strand at 461.337 kb on - strand, within H281DRAFT_03392 at 461.337 kb on - strand, within H281DRAFT_03392 at 461.690 kb on + strand, within H281DRAFT_03392 at 461.732 kb on + strand, within H281DRAFT_03392 at 462.041 kb on + strand, within H281DRAFT_03392 at 462.340 kb on + strand, within H281DRAFT_03392 at 462.341 kb on - strand, within H281DRAFT_03392 at 462.540 kb on + strand at 462.794 kb on - strand at 462.794 kb on - strand at 462.816 kb on - strand at 462.938 kb on + strand at 463.119 kb on + strand at 463.147 kb on + strand, within H281DRAFT_03393 at 463.148 kb on - strand, within H281DRAFT_03393 at 463.148 kb on - strand, within H281DRAFT_03393 at 463.148 kb on - strand, within H281DRAFT_03393 at 463.269 kb on - strand, within H281DRAFT_03393 at 463.412 kb on + strand, within H281DRAFT_03393 at 463.643 kb on + strand at 463.647 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Valeric (C) remove 460,399 + H281DRAFT_03391 0.80 -1.7 460,400 - H281DRAFT_03391 0.80 -0.7 460,657 + +0.1 460,657 + -1.7 460,657 + +0.4 460,658 - -0.7 460,658 - +0.0 460,736 + -0.2 460,789 + +0.8 460,835 + -0.0 460,960 + +0.0 460,979 + +0.4 461,337 - H281DRAFT_03392 0.22 +0.3 461,337 - H281DRAFT_03392 0.22 -0.8 461,690 + H281DRAFT_03392 0.43 -0.0 461,732 + H281DRAFT_03392 0.45 +0.7 462,041 + H281DRAFT_03392 0.63 +1.9 462,340 + H281DRAFT_03392 0.80 -0.3 462,341 - H281DRAFT_03392 0.80 +0.9 462,540 + -1.7 462,794 - +0.6 462,794 - -0.4 462,816 - +0.2 462,938 + +1.9 463,119 + +0.7 463,147 + H281DRAFT_03393 0.11 -2.2 463,148 - H281DRAFT_03393 0.12 +0.3 463,148 - H281DRAFT_03393 0.12 +0.4 463,148 - H281DRAFT_03393 0.12 +0.1 463,269 - H281DRAFT_03393 0.39 -0.9 463,412 + H281DRAFT_03393 0.72 -1.5 463,643 + -0.4 463,647 + +0.7
Or see this region's nucleotide sequence