Experiment: Valeric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03251 and H281DRAFT_03252 are separated by 99 nucleotides H281DRAFT_03252 and H281DRAFT_03253 are separated by 8 nucleotides H281DRAFT_03253 and H281DRAFT_03254 are separated by 42 nucleotides H281DRAFT_03254 and H281DRAFT_03255 are separated by 20 nucleotides
H281DRAFT_03251: H281DRAFT_03251 - transcriptional regulator, ArsR family, at 308,594 to 308,929
_03251
H281DRAFT_03252: H281DRAFT_03252 - 2,4-dihydroxyhept-2-enedioate aldolase (EC 4.1.2.-), at 309,029 to 309,832
_03252
H281DRAFT_03253: H281DRAFT_03253 - 2-oxohept-3-enedioate hydratase, at 309,841 to 310,644
_03253
H281DRAFT_03254: H281DRAFT_03254 - 5-carboxymethyl-2-hydroxymuconate isomerase, at 310,687 to 311,088
_03254
H281DRAFT_03255: H281DRAFT_03255 - 3,4-dihydroxyphenylacetate 2,3-dioxygenase, at 311,109 to 311,972
_03255
Position (kb) 309
310
311 Strain fitness (log2 ratio) -2
-1
0
1
2 at 308.930 kb on - strand at 309.030 kb on + strand at 309.075 kb on + strand at 309.075 kb on + strand at 309.159 kb on + strand, within H281DRAFT_03252 at 309.555 kb on - strand, within H281DRAFT_03252 at 309.839 kb on - strand at 310.161 kb on + strand, within H281DRAFT_03253 at 310.161 kb on + strand, within H281DRAFT_03253 at 310.170 kb on - strand, within H281DRAFT_03253 at 310.381 kb on - strand, within H281DRAFT_03253 at 310.381 kb on - strand, within H281DRAFT_03253 at 311.077 kb on + strand at 311.174 kb on - strand at 311.203 kb on + strand, within H281DRAFT_03255 at 311.574 kb on - strand, within H281DRAFT_03255 at 311.575 kb on + strand, within H281DRAFT_03255
Per-strain Table
Position Strand Gene LocusTag Fraction Valeric (C) remove 308,930 - +1.3 309,030 + -1.9 309,075 + +2.2 309,075 + +0.6 309,159 + H281DRAFT_03252 0.16 +0.1 309,555 - H281DRAFT_03252 0.65 +0.3 309,839 - +0.0 310,161 + H281DRAFT_03253 0.40 +0.9 310,161 + H281DRAFT_03253 0.40 +0.6 310,170 - H281DRAFT_03253 0.41 +0.2 310,381 - H281DRAFT_03253 0.67 +0.3 310,381 - H281DRAFT_03253 0.67 +1.0 311,077 + -0.3 311,174 - +0.6 311,203 + H281DRAFT_03255 0.11 +0.1 311,574 - H281DRAFT_03255 0.54 +0.2 311,575 + H281DRAFT_03255 0.54 -0.3
Or see this region's nucleotide sequence