Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02600

Experiment: Valeric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02599 and H281DRAFT_02600 are separated by 635 nucleotidesH281DRAFT_02600 and H281DRAFT_02601 are separated by 911 nucleotides H281DRAFT_02599: H281DRAFT_02599 - hypothetical protein, at 173,536 to 174,210 _02599 H281DRAFT_02600: H281DRAFT_02600 - Undecaprenyl-diphosphatase (EC 3.6.1.27), at 174,846 to 175,448 _02600 H281DRAFT_02601: H281DRAFT_02601 - two-component system, OmpR family, sensor histidine kinase TctE, at 176,360 to 177,730 _02601 Position (kb) 174 175 176Strain fitness (log2 ratio) -1 0 1at 174.027 kb on + strand, within H281DRAFT_02599at 174.038 kb on + strand, within H281DRAFT_02599at 174.167 kb on + strandat 174.236 kb on - strandat 174.341 kb on - strandat 174.357 kb on + strandat 174.422 kb on + strandat 174.966 kb on + strand, within H281DRAFT_02600at 175.661 kb on + strandat 175.662 kb on - strandat 175.842 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Valeric (C)
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174,027 + H281DRAFT_02599 0.73 -0.5
174,038 + H281DRAFT_02599 0.74 -0.2
174,167 + -0.0
174,236 - -0.8
174,341 - -0.9
174,357 + +0.8
174,422 + +1.3
174,966 + H281DRAFT_02600 0.20 +0.6
175,661 + -0.3
175,662 - +0.3
175,842 - -0.3

Or see this region's nucleotide sequence