Experiment: Valeric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01818 and H281DRAFT_01819 are separated by 352 nucleotides H281DRAFT_01819 and H281DRAFT_01820 are separated by 190 nucleotides
H281DRAFT_01818: H281DRAFT_01818 - filamentous hemagglutinin family N-terminal domain-containing protein, at 718,902 to 721,166
_01818
H281DRAFT_01819: H281DRAFT_01819 - PAS domain S-box-containing protein, at 721,519 to 724,167
_01819
H281DRAFT_01820: H281DRAFT_01820 - microcin C transport system substrate-binding protein, at 724,358 to 726,223
_01820
Position (kb) 721
722
723
724
725 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 720.762 kb on + strand, within H281DRAFT_01818 at 720.762 kb on + strand, within H281DRAFT_01818 at 720.763 kb on - strand, within H281DRAFT_01818 at 720.806 kb on - strand, within H281DRAFT_01818 at 720.929 kb on + strand, within H281DRAFT_01818 at 720.929 kb on + strand, within H281DRAFT_01818 at 721.256 kb on + strand at 721.420 kb on + strand at 721.421 kb on - strand at 721.421 kb on - strand at 721.421 kb on - strand at 721.495 kb on - strand at 721.591 kb on + strand at 721.997 kb on - strand, within H281DRAFT_01819 at 722.231 kb on - strand, within H281DRAFT_01819 at 723.210 kb on - strand, within H281DRAFT_01819 at 723.263 kb on + strand, within H281DRAFT_01819 at 723.283 kb on + strand, within H281DRAFT_01819 at 723.283 kb on + strand, within H281DRAFT_01819 at 723.284 kb on - strand, within H281DRAFT_01819 at 723.284 kb on - strand, within H281DRAFT_01819 at 723.431 kb on - strand, within H281DRAFT_01819 at 723.540 kb on + strand, within H281DRAFT_01819 at 724.108 kb on + strand at 724.109 kb on - strand at 724.166 kb on - strand at 724.689 kb on - strand, within H281DRAFT_01820 at 724.856 kb on + strand, within H281DRAFT_01820 at 724.857 kb on - strand, within H281DRAFT_01820 at 725.052 kb on - strand, within H281DRAFT_01820 at 725.066 kb on + strand, within H281DRAFT_01820 at 725.067 kb on - strand, within H281DRAFT_01820 at 725.109 kb on - strand, within H281DRAFT_01820 at 725.166 kb on - strand, within H281DRAFT_01820
Per-strain Table
Position Strand Gene LocusTag Fraction Valeric (C) remove 720,762 + H281DRAFT_01818 0.82 +0.3 720,762 + H281DRAFT_01818 0.82 -0.1 720,763 - H281DRAFT_01818 0.82 +0.2 720,806 - H281DRAFT_01818 0.84 -1.4 720,929 + H281DRAFT_01818 0.89 -1.8 720,929 + H281DRAFT_01818 0.89 +0.3 721,256 + +0.0 721,420 + -0.5 721,421 - +0.5 721,421 - -0.3 721,421 - +1.2 721,495 - +0.3 721,591 + +0.1 721,997 - H281DRAFT_01819 0.18 +0.5 722,231 - H281DRAFT_01819 0.27 +0.6 723,210 - H281DRAFT_01819 0.64 -0.4 723,263 + H281DRAFT_01819 0.66 -0.3 723,283 + H281DRAFT_01819 0.67 -1.1 723,283 + H281DRAFT_01819 0.67 -0.1 723,284 - H281DRAFT_01819 0.67 +0.1 723,284 - H281DRAFT_01819 0.67 +0.4 723,431 - H281DRAFT_01819 0.72 +1.3 723,540 + H281DRAFT_01819 0.76 +0.2 724,108 + -0.0 724,109 - +1.0 724,166 - -0.4 724,689 - H281DRAFT_01820 0.18 +0.4 724,856 + H281DRAFT_01820 0.27 -0.2 724,857 - H281DRAFT_01820 0.27 -0.7 725,052 - H281DRAFT_01820 0.37 -0.5 725,066 + H281DRAFT_01820 0.38 -0.6 725,067 - H281DRAFT_01820 0.38 -2.8 725,109 - H281DRAFT_01820 0.40 +0.3 725,166 - H281DRAFT_01820 0.43 -0.8
Or see this region's nucleotide sequence