Experiment: Valeric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_00859 and H281DRAFT_00860 are separated by 179 nucleotides H281DRAFT_00860 and H281DRAFT_00861 are separated by 321 nucleotides
H281DRAFT_00859: H281DRAFT_00859 - cystathionine beta-lyase, at 949,861 to 951,045
_00859
H281DRAFT_00860: H281DRAFT_00860 - phosphoserine phosphatase, at 951,225 to 952,064
_00860
H281DRAFT_00861: H281DRAFT_00861 - hypothetical protein, at 952,386 to 953,630
_00861
Position (kb) 951
952
953 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 950.263 kb on + strand, within H281DRAFT_00859 at 950.264 kb on - strand, within H281DRAFT_00859 at 950.822 kb on - strand, within H281DRAFT_00859 at 950.824 kb on - strand, within H281DRAFT_00859 at 950.824 kb on - strand, within H281DRAFT_00859 at 950.898 kb on + strand, within H281DRAFT_00859 at 950.977 kb on + strand at 951.072 kb on + strand at 951.259 kb on + strand at 951.260 kb on - strand at 951.260 kb on - strand at 951.570 kb on + strand, within H281DRAFT_00860 at 952.118 kb on + strand at 952.201 kb on + strand at 952.322 kb on + strand at 952.322 kb on + strand at 952.322 kb on + strand at 952.323 kb on - strand at 952.372 kb on + strand at 952.372 kb on + strand at 952.372 kb on + strand at 952.373 kb on - strand at 952.373 kb on - strand at 952.461 kb on + strand at 952.567 kb on + strand, within H281DRAFT_00861 at 952.567 kb on + strand, within H281DRAFT_00861 at 952.567 kb on + strand, within H281DRAFT_00861 at 952.623 kb on + strand, within H281DRAFT_00861 at 952.992 kb on + strand, within H281DRAFT_00861
Per-strain Table
Position Strand Gene LocusTag Fraction Valeric (C) remove 950,263 + H281DRAFT_00859 0.34 -1.2 950,264 - H281DRAFT_00859 0.34 +1.0 950,822 - H281DRAFT_00859 0.81 -0.6 950,824 - H281DRAFT_00859 0.81 +0.1 950,824 - H281DRAFT_00859 0.81 +1.0 950,898 + H281DRAFT_00859 0.88 +0.0 950,977 + -0.3 951,072 + +0.0 951,259 + -2.1 951,260 - -3.2 951,260 - -3.0 951,570 + H281DRAFT_00860 0.41 -4.1 952,118 + -2.0 952,201 + +0.3 952,322 + -0.1 952,322 + -1.3 952,322 + -0.5 952,323 - -0.0 952,372 + +0.6 952,372 + -2.8 952,372 + +1.4 952,373 - -0.8 952,373 - +0.8 952,461 + -0.6 952,567 + H281DRAFT_00861 0.15 +0.4 952,567 + H281DRAFT_00861 0.15 -0.2 952,567 + H281DRAFT_00861 0.15 -0.1 952,623 + H281DRAFT_00861 0.19 -0.2 952,992 + H281DRAFT_00861 0.49 +1.8
Or see this region's nucleotide sequence