Experiment: Valeric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_00529 and H281DRAFT_00530 are separated by 154 nucleotides H281DRAFT_00530 and H281DRAFT_00531 are separated by 519 nucleotides
H281DRAFT_00529: H281DRAFT_00529 - KUP system potassium uptake protein, at 591,519 to 593,405
_00529
H281DRAFT_00530: H281DRAFT_00530 - uncharacterized protein, at 593,560 to 595,908
_00530
H281DRAFT_00531: H281DRAFT_00531 - hypothetical protein, at 596,428 to 597,186
_00531
Position (kb) 593
594
595
596 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 592.760 kb on - strand, within H281DRAFT_00529 at 592.969 kb on - strand at 593.083 kb on - strand, within H281DRAFT_00529 at 593.205 kb on - strand, within H281DRAFT_00529 at 593.505 kb on - strand at 593.529 kb on + strand at 593.751 kb on + strand at 594.581 kb on - strand, within H281DRAFT_00530 at 594.581 kb on - strand, within H281DRAFT_00530 at 594.847 kb on + strand, within H281DRAFT_00530 at 595.271 kb on + strand, within H281DRAFT_00530 at 595.271 kb on + strand, within H281DRAFT_00530 at 595.272 kb on - strand, within H281DRAFT_00530 at 595.275 kb on - strand, within H281DRAFT_00530 at 595.580 kb on + strand at 595.715 kb on + strand at 595.737 kb on + strand at 595.776 kb on + strand at 595.908 kb on + strand at 595.908 kb on + strand at 595.909 kb on - strand at 596.006 kb on + strand at 596.059 kb on - strand at 596.783 kb on - strand, within H281DRAFT_00531 at 596.866 kb on + strand, within H281DRAFT_00531
Per-strain Table
Position Strand Gene LocusTag Fraction Valeric (C) remove 592,760 - H281DRAFT_00529 0.66 +0.5 592,969 - -0.5 593,083 - H281DRAFT_00529 0.83 -2.5 593,205 - H281DRAFT_00529 0.89 -1.2 593,505 - -0.6 593,529 + -0.8 593,751 + +0.4 594,581 - H281DRAFT_00530 0.43 +0.8 594,581 - H281DRAFT_00530 0.43 -0.5 594,847 + H281DRAFT_00530 0.55 -0.6 595,271 + H281DRAFT_00530 0.73 -0.4 595,271 + H281DRAFT_00530 0.73 +1.3 595,272 - H281DRAFT_00530 0.73 -3.6 595,275 - H281DRAFT_00530 0.73 +0.7 595,580 + -2.1 595,715 + -0.6 595,737 + +0.8 595,776 + -0.1 595,908 + +1.0 595,908 + -0.7 595,909 - +0.4 596,006 + +1.2 596,059 - -0.9 596,783 - H281DRAFT_00531 0.47 -1.9 596,866 + H281DRAFT_00531 0.58 -1.0
Or see this region's nucleotide sequence