Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00409

Experiment: Valeric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_00406 and H281DRAFT_00407 are separated by 239 nucleotidesH281DRAFT_00407 and H281DRAFT_00408 are separated by 109 nucleotidesH281DRAFT_00408 and H281DRAFT_00409 are separated by 83 nucleotidesH281DRAFT_00409 and H281DRAFT_00410 overlap by 41 nucleotidesH281DRAFT_00410 and H281DRAFT_00411 overlap by 1 nucleotides H281DRAFT_00406: H281DRAFT_00406 - Signal transduction histidine kinase, at 449,393 to 450,934 _00406 H281DRAFT_00407: H281DRAFT_00407 - Protein of unknown function (DUF1328), at 451,174 to 451,350 _00407 H281DRAFT_00408: H281DRAFT_00408 - Protein of unknown function (DUF1328), at 451,460 to 451,621 _00408 H281DRAFT_00409: H281DRAFT_00409 - bacterioferritin, at 451,705 to 452,277 _00409 H281DRAFT_00410: H281DRAFT_00410 - two component transcriptional regulator, LuxR family, at 452,237 to 453,028 _00410 H281DRAFT_00411: H281DRAFT_00411 - Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain, at 453,028 to 453,477 _00411 Position (kb) 451 452 453Strain fitness (log2 ratio) -2 -1 0 1at 450.887 kb on - strandat 450.887 kb on - strandat 450.901 kb on + strandat 450.963 kb on - strandat 451.120 kb on + strandat 451.130 kb on + strandat 451.470 kb on - strandat 451.557 kb on + strand, within H281DRAFT_00408at 451.565 kb on + strand, within H281DRAFT_00408at 451.903 kb on + strand, within H281DRAFT_00409at 452.153 kb on - strand, within H281DRAFT_00409at 452.351 kb on - strand, within H281DRAFT_00410at 452.413 kb on - strand, within H281DRAFT_00410at 452.661 kb on - strand, within H281DRAFT_00410at 452.765 kb on + strand, within H281DRAFT_00410at 452.943 kb on - strand, within H281DRAFT_00410at 452.943 kb on - strand, within H281DRAFT_00410at 452.944 kb on + strand, within H281DRAFT_00410at 452.997 kb on - strandat 452.999 kb on + strandat 452.999 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Valeric (C)
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450,887 - +1.3
450,887 - +0.7
450,901 + -2.0
450,963 - -0.2
451,120 + -0.4
451,130 + -0.1
451,470 - -1.2
451,557 + H281DRAFT_00408 0.60 -0.6
451,565 + H281DRAFT_00408 0.65 -0.4
451,903 + H281DRAFT_00409 0.35 -0.7
452,153 - H281DRAFT_00409 0.78 -0.9
452,351 - H281DRAFT_00410 0.14 -0.6
452,413 - H281DRAFT_00410 0.22 +0.7
452,661 - H281DRAFT_00410 0.54 -0.2
452,765 + H281DRAFT_00410 0.67 +1.1
452,943 - H281DRAFT_00410 0.89 -0.4
452,943 - H281DRAFT_00410 0.89 +0.1
452,944 + H281DRAFT_00410 0.89 +0.1
452,997 - -0.4
452,999 + -0.3
452,999 + -1.2

Or see this region's nucleotide sequence