Experiment: Valeric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_00319 and H281DRAFT_00320 are separated by 273 nucleotides H281DRAFT_00320 and H281DRAFT_00321 are separated by 223 nucleotides
H281DRAFT_00319: H281DRAFT_00319 - recombination associated protein RdgC, at 348,006 to 348,929
_00319
H281DRAFT_00320: H281DRAFT_00320 - Uncharacterized conserved protein PhnB, glyoxalase superfamily, at 349,203 to 349,667
_00320
H281DRAFT_00321: H281DRAFT_00321 - Cell wall-associated hydrolase, NlpC family, at 349,891 to 351,606
_00321
Position (kb) 349
350 Strain fitness (log2 ratio) -2
-1
0
1 at 348.248 kb on + strand, within H281DRAFT_00319 at 348.371 kb on + strand, within H281DRAFT_00319 at 348.371 kb on + strand, within H281DRAFT_00319 at 348.622 kb on - strand, within H281DRAFT_00319 at 349.051 kb on + strand at 349.052 kb on - strand at 349.052 kb on - strand at 349.097 kb on + strand at 349.097 kb on + strand at 349.139 kb on + strand at 349.277 kb on + strand, within H281DRAFT_00320 at 349.277 kb on + strand, within H281DRAFT_00320 at 349.802 kb on + strand at 349.982 kb on - strand at 350.127 kb on - strand, within H281DRAFT_00321 at 350.160 kb on + strand, within H281DRAFT_00321 at 350.171 kb on + strand, within H281DRAFT_00321 at 350.171 kb on + strand, within H281DRAFT_00321 at 350.195 kb on + strand, within H281DRAFT_00321 at 350.370 kb on - strand, within H281DRAFT_00321 at 350.394 kb on - strand, within H281DRAFT_00321 at 350.478 kb on + strand, within H281DRAFT_00321
Per-strain Table
Position Strand Gene LocusTag Fraction Valeric (C) remove 348,248 + H281DRAFT_00319 0.26 +0.2 348,371 + H281DRAFT_00319 0.40 -2.1 348,371 + H281DRAFT_00319 0.40 -0.7 348,622 - H281DRAFT_00319 0.67 -1.0 349,051 + -1.7 349,052 - +1.3 349,052 - +0.3 349,097 + -0.4 349,097 + -1.7 349,139 + -0.5 349,277 + H281DRAFT_00320 0.16 +0.5 349,277 + H281DRAFT_00320 0.16 +0.4 349,802 + -0.2 349,982 - +0.5 350,127 - H281DRAFT_00321 0.14 -0.1 350,160 + H281DRAFT_00321 0.16 -0.5 350,171 + H281DRAFT_00321 0.16 -0.0 350,171 + H281DRAFT_00321 0.16 +0.4 350,195 + H281DRAFT_00321 0.18 +0.0 350,370 - H281DRAFT_00321 0.28 +0.5 350,394 - H281DRAFT_00321 0.29 +0.2 350,478 + H281DRAFT_00321 0.34 +0.6
Or see this region's nucleotide sequence