Experiment: m.b. A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c09450 and PGA1_c09460 are separated by 355 nucleotides PGA1_c09460 and PGA1_c09470 are separated by 319 nucleotides
PGA1_c09450: PGA1_c09450 - DNA helicase II UvrD, at 966,842 to 969,205
_c09450
PGA1_c09460: PGA1_c09460 - Uncharacterized conserved small protein, at 969,561 to 969,779
_c09460
PGA1_c09470: PGA1_c09470 - putative ATP-binding protein, at 970,099 to 971,169
_c09470
Position (kb) 969
970 Strain fitness (log2 ratio) -2
-1
0
1 at 968.704 kb on - strand, within PGA1_c09450 at 968.833 kb on + strand, within PGA1_c09450 at 969.045 kb on + strand at 969.123 kb on + strand at 969.131 kb on - strand at 969.207 kb on - strand at 969.221 kb on + strand at 969.229 kb on - strand at 969.244 kb on + strand at 969.392 kb on + strand at 969.397 kb on + strand at 969.412 kb on + strand at 969.473 kb on + strand at 969.495 kb on + strand at 969.535 kb on - strand at 969.548 kb on - strand at 969.610 kb on - strand, within PGA1_c09460 at 969.610 kb on - strand, within PGA1_c09460 at 969.675 kb on - strand, within PGA1_c09460 at 969.753 kb on - strand, within PGA1_c09460 at 969.790 kb on - strand at 969.809 kb on - strand at 969.827 kb on + strand at 969.827 kb on + strand at 969.835 kb on - strand at 969.924 kb on + strand at 969.932 kb on - strand at 969.959 kb on - strand at 969.982 kb on + strand at 970.022 kb on + strand at 970.030 kb on - strand at 970.071 kb on - strand at 970.198 kb on - strand at 970.198 kb on - strand at 970.203 kb on - strand at 970.291 kb on + strand, within PGA1_c09470 at 970.299 kb on - strand, within PGA1_c09470 at 970.299 kb on - strand, within PGA1_c09470 at 970.299 kb on - strand, within PGA1_c09470 at 970.317 kb on - strand, within PGA1_c09470 at 970.353 kb on + strand, within PGA1_c09470 at 970.358 kb on + strand, within PGA1_c09470 at 970.361 kb on - strand, within PGA1_c09470 at 970.370 kb on + strand, within PGA1_c09470 at 970.378 kb on - strand, within PGA1_c09470 at 970.460 kb on - strand, within PGA1_c09470 at 970.466 kb on - strand, within PGA1_c09470 at 970.509 kb on - strand, within PGA1_c09470 at 970.523 kb on + strand, within PGA1_c09470 at 970.531 kb on - strand, within PGA1_c09470 at 970.571 kb on + strand, within PGA1_c09470 at 970.651 kb on - strand, within PGA1_c09470 at 970.658 kb on + strand, within PGA1_c09470 at 970.674 kb on + strand, within PGA1_c09470 at 970.682 kb on - strand, within PGA1_c09470
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.02 mg/ml remove 968,704 - PGA1_c09450 0.79 +0.2 968,833 + PGA1_c09450 0.84 -1.5 969,045 + +0.4 969,123 + +1.3 969,131 - -0.1 969,207 - -0.2 969,221 + -0.5 969,229 - +0.4 969,244 + +0.2 969,392 + +0.3 969,397 + -0.6 969,412 + -0.5 969,473 + -0.3 969,495 + -2.4 969,535 - +0.4 969,548 - -0.4 969,610 - PGA1_c09460 0.22 -0.6 969,610 - PGA1_c09460 0.22 -0.2 969,675 - PGA1_c09460 0.52 -1.6 969,753 - PGA1_c09460 0.88 +0.2 969,790 - +0.5 969,809 - -0.4 969,827 + -1.3 969,827 + +0.1 969,835 - -1.4 969,924 + +0.0 969,932 - +0.5 969,959 - +0.1 969,982 + +1.0 970,022 + -0.0 970,030 - -1.1 970,071 - -0.1 970,198 - -1.2 970,198 - -0.1 970,203 - -0.3 970,291 + PGA1_c09470 0.18 +0.5 970,299 - PGA1_c09470 0.19 +0.0 970,299 - PGA1_c09470 0.19 +0.8 970,299 - PGA1_c09470 0.19 -0.8 970,317 - PGA1_c09470 0.20 +1.2 970,353 + PGA1_c09470 0.24 +0.4 970,358 + PGA1_c09470 0.24 +0.5 970,361 - PGA1_c09470 0.24 +0.4 970,370 + PGA1_c09470 0.25 +0.3 970,378 - PGA1_c09470 0.26 +1.4 970,460 - PGA1_c09470 0.34 +0.8 970,466 - PGA1_c09470 0.34 +0.7 970,509 - PGA1_c09470 0.38 -1.2 970,523 + PGA1_c09470 0.40 -0.7 970,531 - PGA1_c09470 0.40 +1.2 970,571 + PGA1_c09470 0.44 +1.4 970,651 - PGA1_c09470 0.52 -0.2 970,658 + PGA1_c09470 0.52 -0.6 970,674 + PGA1_c09470 0.54 -0.8 970,682 - PGA1_c09470 0.54 +0.2
Or see this region's nucleotide sequence