Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c09030

Experiment: m.b. A22 0.02 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c09020 and PGA1_c09030 are separated by 261 nucleotidesPGA1_c09030 and PGA1_c09040 overlap by 4 nucleotidesPGA1_c09040 and PGA1_c09050 overlap by 25 nucleotides PGA1_c09020: PGA1_c09020 - putative methyl-accepting chemotaxis protein, at 929,005 to 930,939 _c09020 PGA1_c09030: PGA1_c09030 - phosphomethylpyrimidine kinase ThiD, at 931,201 to 931,998 _c09030 PGA1_c09040: PGA1_c09040 - putative adenylyltransferase ThiF, at 931,995 to 932,984 _c09040 PGA1_c09050: PGA1_c09050 - thiamine-phosphate pyrophosphorylase ThiE, at 932,960 to 933,553 _c09050 Position (kb) 931 932Strain fitness (log2 ratio) -2 -1 0 1at 930.257 kb on + strand, within PGA1_c09020at 930.272 kb on + strand, within PGA1_c09020at 930.589 kb on - strand, within PGA1_c09020at 930.980 kb on + strandat 930.980 kb on + strandat 930.988 kb on - strandat 930.988 kb on - strandat 931.018 kb on - strandat 931.064 kb on + strandat 931.069 kb on + strandat 931.077 kb on - strandat 931.103 kb on + strandat 931.130 kb on - strandat 931.199 kb on + strandat 931.199 kb on + strandat 931.255 kb on + strandat 931.255 kb on + strandat 931.316 kb on - strand, within PGA1_c09030at 931.336 kb on + strand, within PGA1_c09030at 931.414 kb on - strand, within PGA1_c09030at 931.418 kb on + strand, within PGA1_c09030at 931.426 kb on - strand, within PGA1_c09030at 931.426 kb on - strand, within PGA1_c09030at 931.480 kb on + strand, within PGA1_c09030at 931.490 kb on + strand, within PGA1_c09030at 931.490 kb on + strand, within PGA1_c09030at 931.613 kb on - strand, within PGA1_c09030at 931.667 kb on - strand, within PGA1_c09030at 931.848 kb on - strand, within PGA1_c09030at 931.880 kb on + strand, within PGA1_c09030at 931.922 kb on - strandat 931.942 kb on + strandat 931.947 kb on + strandat 931.947 kb on + strandat 931.947 kb on + strandat 931.955 kb on - strandat 931.996 kb on + strandat 932.004 kb on - strandat 932.004 kb on - strandat 932.009 kb on - strandat 932.016 kb on + strandat 932.068 kb on - strandat 932.091 kb on + strandat 932.091 kb on + strandat 932.091 kb on + strandat 932.099 kb on - strand, within PGA1_c09040at 932.099 kb on - strand, within PGA1_c09040at 932.099 kb on - strand, within PGA1_c09040at 932.099 kb on - strand, within PGA1_c09040at 932.099 kb on - strand, within PGA1_c09040at 932.184 kb on - strand, within PGA1_c09040at 932.207 kb on - strand, within PGA1_c09040at 932.222 kb on - strand, within PGA1_c09040at 932.267 kb on + strand, within PGA1_c09040at 932.267 kb on + strand, within PGA1_c09040at 932.275 kb on - strand, within PGA1_c09040at 932.353 kb on - strand, within PGA1_c09040at 932.436 kb on + strand, within PGA1_c09040at 932.444 kb on - strand, within PGA1_c09040at 932.496 kb on + strand, within PGA1_c09040at 932.541 kb on - strand, within PGA1_c09040at 932.576 kb on + strand, within PGA1_c09040at 932.576 kb on + strand, within PGA1_c09040at 932.578 kb on + strand, within PGA1_c09040at 932.578 kb on + strand, within PGA1_c09040at 932.578 kb on + strand, within PGA1_c09040at 932.578 kb on + strand, within PGA1_c09040at 932.580 kb on + strand, within PGA1_c09040at 932.584 kb on - strand, within PGA1_c09040at 932.586 kb on - strand, within PGA1_c09040at 932.586 kb on - strand, within PGA1_c09040at 932.586 kb on - strand, within PGA1_c09040at 932.588 kb on + strand, within PGA1_c09040at 932.588 kb on + strand, within PGA1_c09040at 932.596 kb on - strand, within PGA1_c09040at 932.708 kb on + strand, within PGA1_c09040at 932.722 kb on + strand, within PGA1_c09040at 932.757 kb on + strand, within PGA1_c09040at 932.760 kb on - strand, within PGA1_c09040at 932.786 kb on - strand, within PGA1_c09040at 932.789 kb on + strand, within PGA1_c09040at 932.800 kb on + strand, within PGA1_c09040at 932.849 kb on + strand, within PGA1_c09040at 932.859 kb on + strand, within PGA1_c09040at 932.859 kb on + strand, within PGA1_c09040at 932.862 kb on - strand, within PGA1_c09040at 932.981 kb on - strandat 932.981 kb on - strandat 932.981 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.02 mg/ml
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930,257 + PGA1_c09020 0.65 -0.5
930,272 + PGA1_c09020 0.65 -0.7
930,589 - PGA1_c09020 0.82 -0.4
930,980 + +1.0
930,980 + -1.3
930,988 - -0.5
930,988 - -0.6
931,018 - -0.1
931,064 + -0.1
931,069 + -0.3
931,077 - -1.3
931,103 + -0.4
931,130 - +0.7
931,199 + -0.4
931,199 + +0.1
931,255 + -0.2
931,255 + -1.7
931,316 - PGA1_c09030 0.14 -0.9
931,336 + PGA1_c09030 0.17 -1.5
931,414 - PGA1_c09030 0.27 -0.2
931,418 + PGA1_c09030 0.27 +0.1
931,426 - PGA1_c09030 0.28 +0.3
931,426 - PGA1_c09030 0.28 +0.1
931,480 + PGA1_c09030 0.35 -1.2
931,490 + PGA1_c09030 0.36 -0.3
931,490 + PGA1_c09030 0.36 -1.5
931,613 - PGA1_c09030 0.52 -1.2
931,667 - PGA1_c09030 0.58 +0.0
931,848 - PGA1_c09030 0.81 -0.0
931,880 + PGA1_c09030 0.85 +0.1
931,922 - -1.2
931,942 + -1.3
931,947 + -0.5
931,947 + +0.8
931,947 + -0.9
931,955 - -1.2
931,996 + +1.2
932,004 - -1.1
932,004 - -0.1
932,009 - -0.7
932,016 + +0.3
932,068 - -0.5
932,091 + -0.1
932,091 + -0.3
932,091 + -1.4
932,099 - PGA1_c09040 0.11 -1.3
932,099 - PGA1_c09040 0.11 -0.9
932,099 - PGA1_c09040 0.11 +0.6
932,099 - PGA1_c09040 0.11 -0.7
932,099 - PGA1_c09040 0.11 +0.4
932,184 - PGA1_c09040 0.19 +0.2
932,207 - PGA1_c09040 0.21 +0.4
932,222 - PGA1_c09040 0.23 -1.4
932,267 + PGA1_c09040 0.27 +0.8
932,267 + PGA1_c09040 0.27 -0.6
932,275 - PGA1_c09040 0.28 -0.3
932,353 - PGA1_c09040 0.36 +0.1
932,436 + PGA1_c09040 0.45 +0.0
932,444 - PGA1_c09040 0.45 +0.2
932,496 + PGA1_c09040 0.51 -0.1
932,541 - PGA1_c09040 0.55 +0.5
932,576 + PGA1_c09040 0.59 +0.3
932,576 + PGA1_c09040 0.59 -1.5
932,578 + PGA1_c09040 0.59 +0.4
932,578 + PGA1_c09040 0.59 -2.0
932,578 + PGA1_c09040 0.59 -0.5
932,578 + PGA1_c09040 0.59 -1.8
932,580 + PGA1_c09040 0.59 -1.1
932,584 - PGA1_c09040 0.59 -1.9
932,586 - PGA1_c09040 0.60 -0.3
932,586 - PGA1_c09040 0.60 +0.2
932,586 - PGA1_c09040 0.60 -1.3
932,588 + PGA1_c09040 0.60 -1.3
932,588 + PGA1_c09040 0.60 +0.0
932,596 - PGA1_c09040 0.61 -0.5
932,708 + PGA1_c09040 0.72 -0.7
932,722 + PGA1_c09040 0.73 -0.0
932,757 + PGA1_c09040 0.77 -1.6
932,760 - PGA1_c09040 0.77 +0.6
932,786 - PGA1_c09040 0.80 -0.7
932,789 + PGA1_c09040 0.80 +0.2
932,800 + PGA1_c09040 0.81 -1.9
932,849 + PGA1_c09040 0.86 -1.6
932,859 + PGA1_c09040 0.87 -1.5
932,859 + PGA1_c09040 0.87 +0.1
932,862 - PGA1_c09040 0.88 +0.2
932,981 - -0.9
932,981 - -0.7
932,981 - -1.0

Or see this region's nucleotide sequence