Experiment: m.b. A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c08460 and PGA1_c08470 are separated by 17 nucleotides PGA1_c08470 and PGA1_c08480 are separated by 30 nucleotides PGA1_c08480 and PGA1_c08490 are separated by 27 nucleotides PGA1_c08490 and PGA1_c08500 are separated by 235 nucleotides
PGA1_c08460: PGA1_c08460 - putative fatty acid desaturase, at 874,810 to 875,754
_c08460
PGA1_c08470: PGA1_c08470 - putative integral membrane protein, at 875,772 to 876,674
_c08470
PGA1_c08480: PGA1_c08480 - NUDIX hydrolase-like protein, at 876,705 to 877,472
_c08480
PGA1_c08490: PGA1_c08490 - Uncharacterized protein conserved in bacteria, at 877,500 to 877,916
_c08490
PGA1_c08500: PGA1_c08500 - hypothetical protein, at 878,152 to 878,655
_c08500
Position (kb) 876
877
878 Strain fitness (log2 ratio) -2
-1
0
1
2 at 875.708 kb on + strand at 875.728 kb on - strand at 875.746 kb on - strand at 875.824 kb on + strand at 875.851 kb on + strand at 875.851 kb on + strand at 875.859 kb on - strand at 875.861 kb on + strand at 875.861 kb on + strand at 875.861 kb on + strand at 875.861 kb on + strand at 875.896 kb on + strand, within PGA1_c08470 at 875.904 kb on + strand, within PGA1_c08470 at 875.909 kb on + strand, within PGA1_c08470 at 875.909 kb on + strand, within PGA1_c08470 at 875.912 kb on - strand, within PGA1_c08470 at 875.917 kb on - strand, within PGA1_c08470 at 875.932 kb on + strand, within PGA1_c08470 at 875.946 kb on + strand, within PGA1_c08470 at 875.996 kb on + strand, within PGA1_c08470 at 876.006 kb on + strand, within PGA1_c08470 at 876.006 kb on + strand, within PGA1_c08470 at 876.006 kb on + strand, within PGA1_c08470 at 876.006 kb on + strand, within PGA1_c08470 at 876.006 kb on + strand, within PGA1_c08470 at 876.014 kb on - strand, within PGA1_c08470 at 876.014 kb on - strand, within PGA1_c08470 at 876.014 kb on - strand, within PGA1_c08470 at 876.014 kb on - strand, within PGA1_c08470 at 876.014 kb on - strand, within PGA1_c08470 at 876.120 kb on - strand, within PGA1_c08470 at 876.130 kb on - strand, within PGA1_c08470 at 876.149 kb on - strand, within PGA1_c08470 at 876.189 kb on - strand, within PGA1_c08470 at 876.199 kb on - strand, within PGA1_c08470 at 876.199 kb on - strand, within PGA1_c08470 at 876.206 kb on + strand, within PGA1_c08470 at 876.208 kb on + strand, within PGA1_c08470 at 876.228 kb on + strand, within PGA1_c08470 at 876.249 kb on + strand, within PGA1_c08470 at 876.301 kb on - strand, within PGA1_c08470 at 876.349 kb on + strand, within PGA1_c08470 at 876.357 kb on - strand, within PGA1_c08470 at 876.386 kb on + strand, within PGA1_c08470 at 876.403 kb on - strand, within PGA1_c08470 at 876.423 kb on - strand, within PGA1_c08470 at 876.434 kb on + strand, within PGA1_c08470 at 876.463 kb on + strand, within PGA1_c08470 at 876.471 kb on - strand, within PGA1_c08470 at 876.540 kb on + strand, within PGA1_c08470 at 876.549 kb on - strand, within PGA1_c08470 at 876.704 kb on - strand at 876.724 kb on + strand at 876.791 kb on - strand, within PGA1_c08480 at 876.862 kb on + strand, within PGA1_c08480 at 876.939 kb on + strand, within PGA1_c08480 at 877.001 kb on - strand, within PGA1_c08480 at 877.107 kb on - strand, within PGA1_c08480 at 877.170 kb on + strand, within PGA1_c08480 at 877.233 kb on - strand, within PGA1_c08480 at 877.423 kb on + strand at 877.558 kb on + strand, within PGA1_c08490 at 877.558 kb on + strand, within PGA1_c08490 at 877.558 kb on + strand, within PGA1_c08490 at 877.558 kb on + strand, within PGA1_c08490 at 877.657 kb on + strand, within PGA1_c08490 at 877.713 kb on + strand, within PGA1_c08490 at 877.963 kb on + strand at 877.983 kb on + strand at 877.986 kb on - strand at 878.012 kb on - strand at 878.021 kb on + strand at 878.029 kb on + strand at 878.083 kb on + strand at 878.267 kb on + strand, within PGA1_c08500 at 878.329 kb on + strand, within PGA1_c08500 at 878.401 kb on + strand, within PGA1_c08500 at 878.401 kb on + strand, within PGA1_c08500 at 878.404 kb on - strand, within PGA1_c08500 at 878.409 kb on - strand, within PGA1_c08500
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.02 mg/ml remove 875,708 + +0.7 875,728 - +0.5 875,746 - -0.3 875,824 + +1.1 875,851 + -0.4 875,851 + +0.3 875,859 - -0.3 875,861 + +0.9 875,861 + -0.1 875,861 + +0.4 875,861 + -0.8 875,896 + PGA1_c08470 0.14 -0.1 875,904 + PGA1_c08470 0.15 -0.8 875,909 + PGA1_c08470 0.15 +0.3 875,909 + PGA1_c08470 0.15 +0.8 875,912 - PGA1_c08470 0.16 -1.0 875,917 - PGA1_c08470 0.16 -0.2 875,932 + PGA1_c08470 0.18 +0.2 875,946 + PGA1_c08470 0.19 -0.5 875,996 + PGA1_c08470 0.25 +1.0 876,006 + PGA1_c08470 0.26 +0.3 876,006 + PGA1_c08470 0.26 +0.6 876,006 + PGA1_c08470 0.26 +0.1 876,006 + PGA1_c08470 0.26 +1.3 876,006 + PGA1_c08470 0.26 +0.2 876,014 - PGA1_c08470 0.27 +0.3 876,014 - PGA1_c08470 0.27 -0.3 876,014 - PGA1_c08470 0.27 -0.9 876,014 - PGA1_c08470 0.27 +0.3 876,014 - PGA1_c08470 0.27 +0.4 876,120 - PGA1_c08470 0.39 +0.3 876,130 - PGA1_c08470 0.40 +0.4 876,149 - PGA1_c08470 0.42 -0.3 876,189 - PGA1_c08470 0.46 -0.2 876,199 - PGA1_c08470 0.47 -0.1 876,199 - PGA1_c08470 0.47 -0.5 876,206 + PGA1_c08470 0.48 -0.8 876,208 + PGA1_c08470 0.48 +0.3 876,228 + PGA1_c08470 0.50 +0.3 876,249 + PGA1_c08470 0.53 +0.7 876,301 - PGA1_c08470 0.59 -0.3 876,349 + PGA1_c08470 0.64 +0.2 876,357 - PGA1_c08470 0.65 +0.7 876,386 + PGA1_c08470 0.68 +1.9 876,403 - PGA1_c08470 0.70 +0.4 876,423 - PGA1_c08470 0.72 +0.4 876,434 + PGA1_c08470 0.73 -0.1 876,463 + PGA1_c08470 0.77 +0.2 876,471 - PGA1_c08470 0.77 -0.5 876,540 + PGA1_c08470 0.85 +0.2 876,549 - PGA1_c08470 0.86 +0.6 876,704 - -0.4 876,724 + +0.4 876,791 - PGA1_c08480 0.11 -0.7 876,862 + PGA1_c08480 0.20 -0.1 876,939 + PGA1_c08480 0.30 -0.4 877,001 - PGA1_c08480 0.39 -0.3 877,107 - PGA1_c08480 0.52 +0.3 877,170 + PGA1_c08480 0.61 -0.6 877,233 - PGA1_c08480 0.69 -0.6 877,423 + -0.7 877,558 + PGA1_c08490 0.14 -1.8 877,558 + PGA1_c08490 0.14 -0.0 877,558 + PGA1_c08490 0.14 -0.3 877,558 + PGA1_c08490 0.14 -1.1 877,657 + PGA1_c08490 0.38 -0.9 877,713 + PGA1_c08490 0.51 -0.8 877,963 + -0.9 877,983 + -2.2 877,986 - -0.1 878,012 - +1.0 878,021 + +0.3 878,029 + -0.1 878,083 + +0.3 878,267 + PGA1_c08500 0.23 -0.2 878,329 + PGA1_c08500 0.35 -0.7 878,401 + PGA1_c08500 0.49 -0.5 878,401 + PGA1_c08500 0.49 -1.6 878,404 - PGA1_c08500 0.50 -1.9 878,409 - PGA1_c08500 0.51 +0.2
Or see this region's nucleotide sequence