Experiment: m.b. A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_65p00440 and PGA1_65p00450 are separated by 307 nucleotides PGA1_65p00450 and PGA1_65p00460 are separated by 84 nucleotides
PGA1_65p00440: PGA1_65p00440 - UDP-glucuronate 5'-epimerase, at 59,496 to 60,506
_65p00440
PGA1_65p00450: PGA1_65p00450 - UDP-glucose 6-dehydrogenase Ugd, at 60,814 to 62,118
_65p00450
PGA1_65p00460: PGA1_65p00460 - putative plasmid partition protein B, at 62,203 to 63,330
_65p00460
Position (kb) 60
61
62
63 Strain fitness (log2 ratio) -1
0
1
2 at 60.201 kb on + strand, within PGA1_65p00440 at 60.503 kb on - strand at 60.524 kb on - strand at 60.524 kb on - strand at 60.529 kb on - strand at 60.531 kb on + strand at 60.764 kb on - strand at 60.798 kb on + strand at 60.828 kb on + strand at 60.886 kb on + strand at 60.894 kb on - strand at 61.149 kb on + strand, within PGA1_65p00450 at 61.149 kb on + strand, within PGA1_65p00450 at 61.207 kb on + strand, within PGA1_65p00450 at 61.644 kb on - strand, within PGA1_65p00450 at 61.719 kb on + strand, within PGA1_65p00450 at 61.755 kb on + strand, within PGA1_65p00450 at 61.817 kb on + strand, within PGA1_65p00450 at 61.837 kb on - strand, within PGA1_65p00450 at 61.850 kb on + strand, within PGA1_65p00450 at 61.918 kb on - strand, within PGA1_65p00450 at 62.021 kb on + strand at 62.099 kb on + strand at 62.486 kb on - strand, within PGA1_65p00460
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.02 mg/ml remove 60,201 + PGA1_65p00440 0.70 -0.7 60,503 - +0.1 60,524 - +0.8 60,524 - -0.5 60,529 - +0.3 60,531 + +0.3 60,764 - +0.4 60,798 + -1.6 60,828 + +0.2 60,886 + -1.1 60,894 - +1.0 61,149 + PGA1_65p00450 0.26 +1.9 61,149 + PGA1_65p00450 0.26 +0.9 61,207 + PGA1_65p00450 0.30 +0.7 61,644 - PGA1_65p00450 0.64 +0.8 61,719 + PGA1_65p00450 0.69 -0.2 61,755 + PGA1_65p00450 0.72 +0.8 61,817 + PGA1_65p00450 0.77 +1.2 61,837 - PGA1_65p00450 0.78 -1.1 61,850 + PGA1_65p00450 0.79 -0.1 61,918 - PGA1_65p00450 0.85 +0.9 62,021 + +0.6 62,099 + +1.4 62,486 - PGA1_65p00460 0.25 +0.0
Or see this region's nucleotide sequence